Hb_002141_030

Information

Type -
Description -
Location Contig2141: 21483-28320
Sequence    

Annotation

kegg
ID rcu:RCOM_1443460
description hypothetical protein
nr
ID XP_002512780.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LDX1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1
trembl
ID B9RGS1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443460 PE=4 SV=1
Gene Ontology
ID GO:0044444
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22135: 25157-26299 , PASA_asmbl_22137: 27154-27697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002141_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000521_080 0.0619032807 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]
3 Hb_000365_120 0.0689937798 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
4 Hb_002490_020 0.0776229244 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
5 Hb_000403_050 0.0813613662 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
6 Hb_002107_030 0.0831927605 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
7 Hb_000059_330 0.0839236724 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
8 Hb_010222_020 0.0850324293 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
9 Hb_004310_130 0.0876774532 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
10 Hb_007632_030 0.0879837458 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
11 Hb_000329_140 0.0883233498 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
12 Hb_006913_030 0.0893723566 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
13 Hb_009421_020 0.0898762692 - - PREDICTED: caltractin-like [Jatropha curcas]
14 Hb_000053_110 0.091794643 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001983_020 0.0925407082 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
16 Hb_005054_230 0.0926936788 - - PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Jatropha curcas]
17 Hb_003749_010 0.0930487752 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000020_190 0.093180522 - - hypothetical protein RCOM_0452240 [Ricinus communis]
19 Hb_000787_050 0.0951896623 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
20 Hb_000771_120 0.0952739852 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002141_030 Hb_002141_030 Hb_000521_080 Hb_000521_080 Hb_002141_030--Hb_000521_080 Hb_000365_120 Hb_000365_120 Hb_002141_030--Hb_000365_120 Hb_002490_020 Hb_002490_020 Hb_002141_030--Hb_002490_020 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_000059_330 Hb_000059_330 Hb_002141_030--Hb_000059_330 Hb_062135_030 Hb_062135_030 Hb_000521_080--Hb_062135_030 Hb_000212_330 Hb_000212_330 Hb_000521_080--Hb_000212_330 Hb_000094_300 Hb_000094_300 Hb_000521_080--Hb_000094_300 Hb_005054_230 Hb_005054_230 Hb_000521_080--Hb_005054_230 Hb_002728_070 Hb_002728_070 Hb_000521_080--Hb_002728_070 Hb_009421_020 Hb_009421_020 Hb_000365_120--Hb_009421_020 Hb_007632_030 Hb_007632_030 Hb_000365_120--Hb_007632_030 Hb_001390_110 Hb_001390_110 Hb_000365_120--Hb_001390_110 Hb_156973_010 Hb_156973_010 Hb_000365_120--Hb_156973_010 Hb_005697_060 Hb_005697_060 Hb_000365_120--Hb_005697_060 Hb_000329_320 Hb_000329_320 Hb_002490_020--Hb_000329_320 Hb_004195_270 Hb_004195_270 Hb_002490_020--Hb_004195_270 Hb_003747_200 Hb_003747_200 Hb_002490_020--Hb_003747_200 Hb_010222_020 Hb_010222_020 Hb_002490_020--Hb_010222_020 Hb_002600_090 Hb_002600_090 Hb_002490_020--Hb_002600_090 Hb_003125_120 Hb_003125_120 Hb_000403_050--Hb_003125_120 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_000334_280 Hb_000334_280 Hb_000403_050--Hb_000334_280 Hb_000403_050--Hb_156973_010 Hb_001163_050 Hb_001163_050 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220 Hb_000329_470 Hb_000329_470 Hb_002107_030--Hb_000329_470 Hb_002107_030--Hb_005054_230 Hb_006913_030 Hb_006913_030 Hb_002107_030--Hb_006913_030 Hb_167498_010 Hb_167498_010 Hb_002107_030--Hb_167498_010 Hb_003050_220 Hb_003050_220 Hb_002107_030--Hb_003050_220 Hb_003158_010 Hb_003158_010 Hb_002107_030--Hb_003158_010 Hb_096563_010 Hb_096563_010 Hb_000059_330--Hb_096563_010 Hb_001259_090 Hb_001259_090 Hb_000059_330--Hb_001259_090 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_003092_040 Hb_003092_040 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75086 0.663651 0.85229 0.600521 0.908609 1.01909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.67497 1.3355 0.966602 0.803898 0.891527

CAGE analysis