Hb_003050_220

Information

Type -
Description -
Location Contig3050: 197682-202864
Sequence    

Annotation

kegg
ID rcu:RCOM_0633230
description hypothetical protein
nr
ID KDP37958.1
description hypothetical protein JCGZ_04601 [Jatropha curcas]
swissprot
ID Q8GWI5
description Uncharacterized protein At4g18255 OS=Arabidopsis thaliana GN=At4g18255 PE=1 SV=1
trembl
ID A0A067KSH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04601 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cytochrome b561-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32151: 197788-202670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_220 0.0 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
2 Hb_001579_220 0.0641367074 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
3 Hb_001902_140 0.0661341655 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
4 Hb_000015_040 0.0710912564 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
5 Hb_032202_190 0.0717333144 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
6 Hb_002107_030 0.0736469775 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
7 Hb_000958_110 0.0742945676 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
8 Hb_001545_080 0.0764148653 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
9 Hb_002061_040 0.0811494944 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
10 Hb_005618_170 0.0812294532 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
11 Hb_001006_190 0.0814628807 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
12 Hb_007441_200 0.0824124739 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
13 Hb_000684_470 0.0825419425 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
14 Hb_000679_010 0.0842044929 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
15 Hb_006615_020 0.0844763696 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
16 Hb_172426_040 0.0876604244 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
17 Hb_027380_050 0.0886527986 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
18 Hb_000329_470 0.088658131 - - ccr4-not transcription complex, putative [Ricinus communis]
19 Hb_000227_120 0.0886987638 - - conserved hypothetical protein [Ricinus communis]
20 Hb_089995_010 0.089504701 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_003050_220 Hb_003050_220 Hb_001579_220 Hb_001579_220 Hb_003050_220--Hb_001579_220 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_000015_040 Hb_000015_040 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_000703_350 Hb_000703_350 Hb_001902_140--Hb_000703_350 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_002107_030--Hb_000329_470 Hb_005054_230 Hb_005054_230 Hb_002107_030--Hb_005054_230 Hb_006913_030 Hb_006913_030 Hb_002107_030--Hb_006913_030 Hb_167498_010 Hb_167498_010 Hb_002107_030--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_002107_030--Hb_003158_010 Hb_000958_110--Hb_000015_040 Hb_000002_340 Hb_000002_340 Hb_000958_110--Hb_000002_340 Hb_002232_410 Hb_002232_410 Hb_000958_110--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000958_110--Hb_003151_040 Hb_017224_030 Hb_017224_030 Hb_000958_110--Hb_017224_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.03127 4.78521 3.27638 3.84583 5.30049 5.22026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9943 8.83571 7.23344 6.74105 4.96233

CAGE analysis