Hb_000703_350

Information

Type -
Description -
Location Contig703: 310341-322803
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22820g
description POPTRDRAFT_559520; hypothetical protein
nr
ID XP_012081590.1
description PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
swissprot
ID Q28D01
description WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2
trembl
ID A0A067K451
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19323 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54973: 310283-322727 , PASA_asmbl_54974: 310283-322681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000703_350 0.0 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
2 Hb_003605_090 0.053751787 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
3 Hb_005846_040 0.0619137462 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
4 Hb_001902_140 0.063104477 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
5 Hb_004109_170 0.0659548875 - - PREDICTED: probable ribokinase [Jatropha curcas]
6 Hb_001300_150 0.0673732362 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
7 Hb_012019_010 0.0689170667 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
8 Hb_000477_060 0.0707239489 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_002046_180 0.0712687213 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
10 Hb_000260_030 0.0713798371 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
11 Hb_000030_030 0.0735349818 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
12 Hb_118419_010 0.0736954952 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
13 Hb_004934_100 0.0738055362 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000876_070 0.0738237876 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
15 Hb_027380_130 0.0740662519 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
16 Hb_000599_250 0.0740698963 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
17 Hb_000331_200 0.0742034313 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
18 Hb_003582_060 0.074366522 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
19 Hb_000676_180 0.0753006641 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
20 Hb_003697_040 0.0754950752 - - hypothetical protein B456_005G209600 [Gossypium raimondii]

Gene co-expression network

sample Hb_000703_350 Hb_000703_350 Hb_003605_090 Hb_003605_090 Hb_000703_350--Hb_003605_090 Hb_005846_040 Hb_005846_040 Hb_000703_350--Hb_005846_040 Hb_001902_140 Hb_001902_140 Hb_000703_350--Hb_001902_140 Hb_004109_170 Hb_004109_170 Hb_000703_350--Hb_004109_170 Hb_001300_150 Hb_001300_150 Hb_000703_350--Hb_001300_150 Hb_012019_010 Hb_012019_010 Hb_000703_350--Hb_012019_010 Hb_003697_040 Hb_003697_040 Hb_003605_090--Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003605_090--Hb_000477_060 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_004934_100 Hb_004934_100 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_003050_220 Hb_003050_220 Hb_001902_140--Hb_003050_220 Hb_006420_080 Hb_006420_080 Hb_001902_140--Hb_006420_080 Hb_032202_190 Hb_032202_190 Hb_001902_140--Hb_032202_190 Hb_000684_470 Hb_000684_470 Hb_001902_140--Hb_000684_470 Hb_005463_100 Hb_005463_100 Hb_001902_140--Hb_005463_100 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_001300_150--Hb_000260_030 Hb_002046_180 Hb_002046_180 Hb_012019_010--Hb_002046_180 Hb_012019_010--Hb_005463_100 Hb_005779_060 Hb_005779_060 Hb_012019_010--Hb_005779_060 Hb_000876_070 Hb_000876_070 Hb_012019_010--Hb_000876_070 Hb_002110_150 Hb_002110_150 Hb_012019_010--Hb_002110_150 Hb_000614_160 Hb_000614_160 Hb_012019_010--Hb_000614_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.8558 18.5672 20.9407 31.5663 22.4738 22.6149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0461 45.1021 42.5658 22.288 22.4984

CAGE analysis