Hb_006615_240

Information

Type -
Description -
Location Contig6615: 162281-168345
Sequence    

Annotation

kegg
ID rcu:RCOM_1467330
description hypothetical protein
nr
ID XP_012080438.1
description PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11768 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53051: 162266-168319 , PASA_asmbl_53053: 162293-168302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006615_240 0.0 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
2 Hb_003582_060 0.0408222791 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
3 Hb_010098_050 0.0495702472 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]
4 Hb_000390_300 0.0585286323 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
5 Hb_004109_170 0.0593506675 - - PREDICTED: probable ribokinase [Jatropha curcas]
6 Hb_000003_230 0.0610507181 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_001341_150 0.061129756 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
8 Hb_000336_150 0.0626819121 - - ribulose-5-phosphate-3-epimerase, putative [Ricinus communis]
9 Hb_000221_190 0.0628653382 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
10 Hb_000310_020 0.0629776848 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
11 Hb_004058_030 0.0641188496 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
12 Hb_004143_150 0.0652921584 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
13 Hb_005846_040 0.0657755912 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
14 Hb_004324_090 0.0662576464 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
15 Hb_000431_170 0.0682860791 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
16 Hb_006573_190 0.0686065066 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
17 Hb_001278_100 0.0690490776 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
18 Hb_000805_240 0.069548135 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
19 Hb_001931_010 0.0701399635 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
20 Hb_000205_090 0.0702187569 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]

Gene co-expression network

sample Hb_006615_240 Hb_006615_240 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_010098_050--Hb_001341_150 Hb_000205_090 Hb_000205_090 Hb_010098_050--Hb_000205_090 Hb_019280_050 Hb_019280_050 Hb_010098_050--Hb_019280_050 Hb_000431_170 Hb_000431_170 Hb_010098_050--Hb_000431_170 Hb_008013_050 Hb_008013_050 Hb_010098_050--Hb_008013_050 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_000003_230--Hb_007676_080 Hb_000003_230--Hb_003304_020 Hb_000003_230--Hb_006573_190 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18226 10.044 14.0893 14.4262 9.95349 9.56724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1908 24.5791 17.239 11.6339 10.1827

CAGE analysis