Hb_004109_170

Information

Type -
Description -
Location Contig4109: 132414-139785
Sequence    

Annotation

kegg
ID rcu:RCOM_1715710
description ribokinase, putative (EC:2.7.1.15)
nr
ID XP_012087689.1
description PREDICTED: probable ribokinase [Jatropha curcas]
swissprot
ID P36945
description Ribokinase OS=Bacillus subtilis (strain 168) GN=rbsK PE=3 SV=2
trembl
ID A0A067JLI0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25708 PE=3 SV=1
Gene Ontology
ID GO:0009507
description probable ribokinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40645: 132701-139724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_170 0.0 - - PREDICTED: probable ribokinase [Jatropha curcas]
2 Hb_000205_090 0.0511350748 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
3 Hb_000580_090 0.0539223045 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
4 Hb_000260_030 0.0551118513 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
5 Hb_118419_010 0.0581702113 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
6 Hb_012286_030 0.0588615057 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
7 Hb_006615_240 0.0593506675 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
8 Hb_029879_130 0.0608584882 - - Derlin-2, putative [Ricinus communis]
9 Hb_000827_050 0.0615838826 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_005846_040 0.0629423775 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
11 Hb_000373_070 0.0643546267 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
12 Hb_004934_100 0.0649975309 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000703_350 0.0659548875 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
14 Hb_000656_240 0.0667529748 - - proteasome subunit alpha type, putative [Ricinus communis]
15 Hb_003582_060 0.0679463321 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
16 Hb_006059_050 0.0691621097 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
17 Hb_004116_190 0.0693171809 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
18 Hb_003151_040 0.0699317753 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
19 Hb_000638_250 0.0701597659 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_010098_050 0.0702891786 - - PREDICTED: putative deoxyribonuclease tatdn3-A [Jatropha curcas]

Gene co-expression network

sample Hb_004109_170 Hb_004109_170 Hb_000205_090 Hb_000205_090 Hb_004109_170--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_118419_010 Hb_118419_010 Hb_004109_170--Hb_118419_010 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_000580_090--Hb_012286_030 Hb_000580_090--Hb_000656_240 Hb_000580_090--Hb_004116_190 Hb_000815_320 Hb_000815_320 Hb_000580_090--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_000580_090--Hb_001105_030 Hb_050514_010 Hb_050514_010 Hb_000260_030--Hb_050514_010 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000827_050 Hb_000827_050 Hb_000260_030--Hb_000827_050 Hb_001300_150 Hb_001300_150 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_118419_010--Hb_000580_090 Hb_004195_270 Hb_004195_270 Hb_118419_010--Hb_004195_270 Hb_118419_010--Hb_001105_030 Hb_118419_010--Hb_000815_320 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_003582_060 Hb_003582_060 Hb_006615_240--Hb_003582_060 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9522 8.10437 13.3373 11.2548 10.5528 11.1003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5961 21.7093 18.7775 8.85741 9.691

CAGE analysis