Hb_001252_130

Information

Type -
Description -
Location Contig1252: 116420-118749
Sequence    

Annotation

kegg
ID rcu:RCOM_1482370
description Protein YIPF1, putative
nr
ID XP_012088521.1
description PREDICTED: protein YIPF1 homolog [Jatropha curcas]
swissprot
ID Q54TS4
description Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1
trembl
ID A0A067LCB5
description Protein YIPF OS=Jatropha curcas GN=JCGZ_01378 PE=3 SV=1
Gene Ontology
ID GO:0016021
description integral membrane yip1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07732: 116501-131605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_130 0.0 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
2 Hb_005496_140 0.0558241635 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000081_160 0.0561291307 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
4 Hb_001971_010 0.0588422756 - - F23N19.4 [Arabidopsis thaliana]
5 Hb_000599_250 0.0642868287 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
6 Hb_000215_110 0.0658762175 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
7 Hb_000054_090 0.0690723929 - - zinc finger protein, putative [Ricinus communis]
8 Hb_002863_050 0.0696441379 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_033594_120 0.0701849786 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
10 Hb_002235_250 0.0704193238 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
11 Hb_002641_060 0.0708032097 - - prefoldin subunit, putative [Ricinus communis]
12 Hb_003605_090 0.0708867902 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
13 Hb_004934_100 0.0717590478 - - conserved hypothetical protein [Ricinus communis]
14 Hb_028697_010 0.0739701592 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
15 Hb_006478_020 0.0741379585 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000331_260 0.076135884 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
17 Hb_000421_220 0.0768819719 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
18 Hb_001279_150 0.0775892888 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
19 Hb_000375_350 0.0777306153 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
20 Hb_001711_020 0.0788193423 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]

Gene co-expression network

sample Hb_001252_130 Hb_001252_130 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_000081_160 Hb_000081_160 Hb_001252_130--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_000054_090 Hb_000054_090 Hb_001252_130--Hb_000054_090 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_000081_160--Hb_000215_110 Hb_002641_060 Hb_002641_060 Hb_000081_160--Hb_002641_060 Hb_001318_280 Hb_001318_280 Hb_000081_160--Hb_001318_280 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_001599_040 Hb_001599_040 Hb_000081_160--Hb_001599_040 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_004934_100 Hb_004934_100 Hb_000599_250--Hb_004934_100 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_000599_250--Hb_005496_140 Hb_000599_250--Hb_002641_060 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000215_110--Hb_000331_260 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180 Hb_007672_060 Hb_007672_060 Hb_000054_090--Hb_007672_060 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000054_090--Hb_000081_160 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.1893 17.2761 25.1393 41.6428 25.7057 39.8542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.5527 47.998 34.1135 23.2578 30.6766

CAGE analysis