Hb_001318_280

Information

Type -
Description -
Location Contig1318: 230617-235826
Sequence    

Annotation

kegg
ID rcu:RCOM_1345570
description Protein FAM18B, putative
nr
ID XP_002515234.1
description Protein FAM18B, putative [Ricinus communis]
swissprot
ID Q8LEK2
description Golgi apparatus membrane protein-like protein ECHIDNA OS=Arabidopsis thaliana GN=ECH PE=1 SV=1
trembl
ID B9RN95
description Golgi apparatus membrane protein TVP23 OS=Ricinus communis GN=RCOM_1345570 PE=3 SV=1
Gene Ontology
ID GO:0016021
description golgi apparatus membrane protein echidna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09235: 230594-235902 , PASA_asmbl_09236: 232661-233367 , PASA_asmbl_09237: 233508-233902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001318_280 0.0 - - Protein FAM18B, putative [Ricinus communis]
2 Hb_172632_100 0.0482606975 - - PREDICTED: reticulon-like protein B22 [Jatropha curcas]
3 Hb_003994_230 0.0612932379 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
4 Hb_008616_050 0.0613782512 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
5 Hb_000081_160 0.062536004 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
6 Hb_002553_060 0.064519814 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
7 Hb_002641_060 0.0673646389 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_001599_040 0.0677798162 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
9 Hb_008847_030 0.0682425679 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
10 Hb_000431_170 0.0689148386 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
11 Hb_001268_240 0.0691931309 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
12 Hb_123915_040 0.0711288756 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
13 Hb_000441_200 0.0734928274 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_000905_110 0.0746713676 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
15 Hb_000417_130 0.0753442663 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
16 Hb_001366_370 0.0763376746 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
17 Hb_009898_050 0.0777422718 - - PREDICTED: beta-taxilin [Jatropha curcas]
18 Hb_000640_170 0.0788178235 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
19 Hb_003226_140 0.0792110952 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
20 Hb_000392_430 0.0799492567 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]

Gene co-expression network

sample Hb_001318_280 Hb_001318_280 Hb_172632_100 Hb_172632_100 Hb_001318_280--Hb_172632_100 Hb_003994_230 Hb_003994_230 Hb_001318_280--Hb_003994_230 Hb_008616_050 Hb_008616_050 Hb_001318_280--Hb_008616_050 Hb_000081_160 Hb_000081_160 Hb_001318_280--Hb_000081_160 Hb_002553_060 Hb_002553_060 Hb_001318_280--Hb_002553_060 Hb_002641_060 Hb_002641_060 Hb_001318_280--Hb_002641_060 Hb_011628_060 Hb_011628_060 Hb_172632_100--Hb_011628_060 Hb_001268_240 Hb_001268_240 Hb_172632_100--Hb_001268_240 Hb_172632_100--Hb_000081_160 Hb_172632_100--Hb_008616_050 Hb_001599_040 Hb_001599_040 Hb_172632_100--Hb_001599_040 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_009898_050 Hb_009898_050 Hb_008616_050--Hb_009898_050 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030 Hb_001252_130 Hb_001252_130 Hb_000081_160--Hb_001252_130 Hb_000215_110 Hb_000215_110 Hb_000081_160--Hb_000215_110 Hb_000081_160--Hb_002641_060 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_000081_160--Hb_001599_040 Hb_001946_400 Hb_001946_400 Hb_002553_060--Hb_001946_400 Hb_001021_150 Hb_001021_150 Hb_002553_060--Hb_001021_150 Hb_002553_060--Hb_008616_050 Hb_000976_120 Hb_000976_120 Hb_002553_060--Hb_000976_120 Hb_189216_020 Hb_189216_020 Hb_002553_060--Hb_189216_020 Hb_013575_010 Hb_013575_010 Hb_002641_060--Hb_013575_010 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_000375_350 Hb_000375_350 Hb_002641_060--Hb_000375_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.0035 31.4395 63.6742 79.6921 73.0178 62.4483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.7717 92.9311 51.1087 75.9135 51.8995

CAGE analysis