Hb_001711_020

Information

Type -
Description -
Location Contig1711: 7204-20106
Sequence    

Annotation

kegg
ID tcc:TCM_015733
description Clathrin adaptor complexes medium subunit family protein isoform 1
nr
ID XP_012077834.1
description PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
swissprot
ID O23140
description AP-2 complex subunit mu OS=Arabidopsis thaliana GN=AP2M PE=1 SV=1
trembl
ID A0A067KDR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13593 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-2 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15982: 7076-20078
cDNA
(Sanger)
(ID:Location)		 041_L01.ab1: 15467-20034 , 047_J17.ab1: 15082-20013

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001711_020 0.0 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
2 Hb_000599_250 0.0417549364 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
3 Hb_004934_100 0.0682026062 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001300_150 0.0703814348 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
5 Hb_002600_090 0.0709740589 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001971_010 0.0715888803 - - F23N19.4 [Arabidopsis thaliana]
7 Hb_000375_350 0.0738288015 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
8 Hb_000676_250 0.0754789343 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
9 Hb_006478_020 0.0761861613 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_119600_070 0.0768967615 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
11 Hb_000200_020 0.0772525401 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
12 Hb_003177_030 0.077341461 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
13 Hb_001252_130 0.0788193423 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
14 Hb_000019_030 0.0800432157 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
15 Hb_000116_270 0.0804260727 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
16 Hb_010361_010 0.081746675 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
17 Hb_001159_130 0.082705025 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
18 Hb_008841_020 0.0833397862 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
19 Hb_026198_070 0.0836365592 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
20 Hb_002235_250 0.0837341005 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001711_020 Hb_001711_020 Hb_000599_250 Hb_000599_250 Hb_001711_020--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_001711_020--Hb_004934_100 Hb_001300_150 Hb_001300_150 Hb_001711_020--Hb_001300_150 Hb_002600_090 Hb_002600_090 Hb_001711_020--Hb_002600_090 Hb_001971_010 Hb_001971_010 Hb_001711_020--Hb_001971_010 Hb_000375_350 Hb_000375_350 Hb_001711_020--Hb_000375_350 Hb_000599_250--Hb_004934_100 Hb_000599_250--Hb_000375_350 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_000985_030 Hb_000985_030 Hb_004934_100--Hb_000985_030 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_001300_150--Hb_000375_350 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030 Hb_002600_090--Hb_000985_030 Hb_002600_090--Hb_001971_010 Hb_002600_090--Hb_000599_250 Hb_002600_090--Hb_000260_030 Hb_002600_090--Hb_001489_080 Hb_001252_130 Hb_001252_130 Hb_001971_010--Hb_001252_130 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_005496_140 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9412 7.93418 22.4011 24.2786 15.2721 22.5659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4397 24.4317 28.2637 17.2823 18.1357

CAGE analysis