Hb_001489_080

Information

Type -
Description -
Location Contig1489: 60071-65748
Sequence    

Annotation

kegg
ID rcu:RCOM_0698010
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.25)
nr
ID XP_002520138.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LFP7
description Probable receptor-like protein kinase At5g15080 OS=Arabidopsis thaliana GN=At5g15080 PE=2 SV=1
trembl
ID B9S2B9
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_0698010 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g15080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12363: 60202-65610 , PASA_asmbl_12364: 63700-64257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_080 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_000985_030 0.0501455741 - - PREDICTED: RRP15-like protein [Populus euphratica]
3 Hb_004934_100 0.058984997 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000783_020 0.0604448318 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
5 Hb_000599_250 0.0673473544 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
6 Hb_000003_230 0.067467299 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
7 Hb_002169_040 0.067994216 - - unknown [Populus trichocarpa]
8 Hb_008841_020 0.0704578749 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
9 Hb_002600_090 0.0716480393 - - ATP binding protein, putative [Ricinus communis]
10 Hb_006420_080 0.073465483 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_034380_020 0.0734838803 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
12 Hb_001828_150 0.0748481297 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
13 Hb_000260_030 0.0754210923 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
14 Hb_000207_050 0.0767981646 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
15 Hb_000827_050 0.0768231345 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_003768_030 0.0774374047 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
17 Hb_003697_040 0.0775267295 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
18 Hb_156279_020 0.0777065006 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_000288_030 0.0780544189 - - PREDICTED: syntaxin-32 [Jatropha curcas]
20 Hb_002799_070 0.0782394427 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]

Gene co-expression network

sample Hb_001489_080 Hb_001489_080 Hb_000985_030 Hb_000985_030 Hb_001489_080--Hb_000985_030 Hb_004934_100 Hb_004934_100 Hb_001489_080--Hb_004934_100 Hb_000783_020 Hb_000783_020 Hb_001489_080--Hb_000783_020 Hb_000599_250 Hb_000599_250 Hb_001489_080--Hb_000599_250 Hb_000003_230 Hb_000003_230 Hb_001489_080--Hb_000003_230 Hb_002169_040 Hb_002169_040 Hb_001489_080--Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_005269_070 Hb_005269_070 Hb_000985_030--Hb_005269_070 Hb_000985_030--Hb_004934_100 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_003697_040 Hb_003697_040 Hb_004934_100--Hb_003697_040 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_001711_020 Hb_001711_020 Hb_000599_250--Hb_001711_020 Hb_000375_350 Hb_000375_350 Hb_000599_250--Hb_000375_350 Hb_001300_150 Hb_001300_150 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_007676_080 Hb_007676_080 Hb_000003_230--Hb_007676_080 Hb_003304_020 Hb_003304_020 Hb_000003_230--Hb_003304_020 Hb_003582_060 Hb_003582_060 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_002169_040--Hb_005269_070 Hb_002169_040--Hb_007676_080 Hb_156279_020 Hb_156279_020 Hb_002169_040--Hb_156279_020 Hb_002169_040--Hb_000003_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.94047 4.845 8.88805 9.22328 6.53457 8.66072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4722 14.0064 15.1078 10.7385 12.0191

CAGE analysis