Hb_000220_220

Information

Type -
Description -
Location Contig220: 330305-334884
Sequence    

Annotation

kegg
ID rcu:RCOM_0275590
description hypothetical protein
nr
ID XP_012075695.1
description PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
swissprot
ID Q5U4I3
description Cyclin-D1-binding protein 1 homolog OS=Xenopus laevis GN=ccndbp1 PE=2 SV=2
trembl
ID A0A067KT26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09287 PE=4 SV=1
Gene Ontology
ID GO:0051726
description cyclin-d1-binding protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22671: 330826-333167 , PASA_asmbl_22672: 333485-334285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000220_220 0.0 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
2 Hb_000116_440 0.0686656875 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
3 Hb_001579_220 0.072684135 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
4 Hb_003494_200 0.0812092617 - - PREDICTED: beta-1,3-galactosyltransferase 15-like [Jatropha curcas]
5 Hb_000680_160 0.0856611558 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
6 Hb_029879_110 0.0856773254 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
7 Hb_000853_170 0.0875268656 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
8 Hb_000329_470 0.0896210353 - - ccr4-not transcription complex, putative [Ricinus communis]
9 Hb_003050_220 0.0901282985 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
10 Hb_002107_030 0.0916242478 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
11 Hb_000003_080 0.0922915026 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
12 Hb_000853_350 0.0927996711 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
13 Hb_004577_020 0.095651724 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
14 Hb_002078_130 0.0961402457 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
15 Hb_027472_150 0.0968473118 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
16 Hb_000002_340 0.0991695732 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
17 Hb_000032_270 0.1004694819 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
18 Hb_002893_080 0.1017634861 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
19 Hb_003428_030 0.1021923004 - - tRNA, putative [Ricinus communis]
20 Hb_000015_040 0.1022169784 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000220_220 Hb_000220_220 Hb_000116_440 Hb_000116_440 Hb_000220_220--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_000220_220--Hb_001579_220 Hb_003494_200 Hb_003494_200 Hb_000220_220--Hb_003494_200 Hb_000680_160 Hb_000680_160 Hb_000220_220--Hb_000680_160 Hb_029879_110 Hb_029879_110 Hb_000220_220--Hb_029879_110 Hb_000853_170 Hb_000853_170 Hb_000220_220--Hb_000853_170 Hb_000103_090 Hb_000103_090 Hb_000116_440--Hb_000103_090 Hb_002893_080 Hb_002893_080 Hb_000116_440--Hb_002893_080 Hb_000003_080 Hb_000003_080 Hb_000116_440--Hb_000003_080 Hb_002890_140 Hb_002890_140 Hb_000116_440--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000116_440--Hb_032717_080 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_000130_410 Hb_000130_410 Hb_003494_200--Hb_000130_410 Hb_000907_110 Hb_000907_110 Hb_003494_200--Hb_000907_110 Hb_003494_200--Hb_000680_160 Hb_003294_070 Hb_003294_070 Hb_003494_200--Hb_003294_070 Hb_003494_200--Hb_000015_040 Hb_000032_270 Hb_000032_270 Hb_000680_160--Hb_000032_270 Hb_002078_350 Hb_002078_350 Hb_000680_160--Hb_002078_350 Hb_003428_030 Hb_003428_030 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_005188_080 Hb_005188_080 Hb_000680_160--Hb_005188_080 Hb_029879_110--Hb_000116_440 Hb_004310_030 Hb_004310_030 Hb_029879_110--Hb_004310_030 Hb_000062_550 Hb_000062_550 Hb_029879_110--Hb_000062_550 Hb_005064_060 Hb_005064_060 Hb_029879_110--Hb_005064_060 Hb_011883_010 Hb_011883_010 Hb_029879_110--Hb_011883_010 Hb_000853_420 Hb_000853_420 Hb_000853_170--Hb_000853_420 Hb_000109_090 Hb_000109_090 Hb_000853_170--Hb_000109_090 Hb_005276_210 Hb_005276_210 Hb_000853_170--Hb_005276_210 Hb_001006_140 Hb_001006_140 Hb_000853_170--Hb_001006_140 Hb_015746_010 Hb_015746_010 Hb_000853_170--Hb_015746_010 Hb_004577_020 Hb_004577_020 Hb_000853_170--Hb_004577_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.63773 6.52712 2.59789 5.63357 8.68849 7.79684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8348 10.4543 5.35843 8.20035 5.1205

CAGE analysis