Hb_005188_080

Information

Type -
Description -
Location Contig5188: 86354-91151
Sequence    

Annotation

kegg
ID rcu:RCOM_0791560
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25)
nr
ID XP_002525952.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9LFV3
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1
trembl
ID B9SIY3
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0791560 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at5g15730 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46638: 86322-91162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005188_080 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_000015_040 0.0760229918 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
3 Hb_000680_160 0.0760551123 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
4 Hb_002078_350 0.076693854 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
5 Hb_001545_170 0.077309063 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
6 Hb_001579_220 0.0796692557 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
7 Hb_000645_090 0.08042555 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003777_320 0.081623625 - - PREDICTED: U3 small nucleolar RNA-associated protein 15 homolog [Jatropha curcas]
9 Hb_008453_030 0.0826612445 - - Thioredoxin superfamily protein [Theobroma cacao]
10 Hb_002481_080 0.0859854645 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
11 Hb_000477_060 0.087310455 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_000003_320 0.0880178077 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
13 Hb_000092_170 0.0886272181 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
14 Hb_000696_330 0.08883895 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
15 Hb_000078_120 0.0891581289 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
16 Hb_000329_340 0.08918154 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005914_170 0.0894137784 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
18 Hb_000948_160 0.090099967 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
19 Hb_010423_030 0.0902489691 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
20 Hb_002000_080 0.0904069347 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005188_080 Hb_005188_080 Hb_000015_040 Hb_000015_040 Hb_005188_080--Hb_000015_040 Hb_000680_160 Hb_000680_160 Hb_005188_080--Hb_000680_160 Hb_002078_350 Hb_002078_350 Hb_005188_080--Hb_002078_350 Hb_001545_170 Hb_001545_170 Hb_005188_080--Hb_001545_170 Hb_001579_220 Hb_001579_220 Hb_005188_080--Hb_001579_220 Hb_000645_090 Hb_000645_090 Hb_005188_080--Hb_000645_090 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_000015_040--Hb_001579_220 Hb_003050_220 Hb_003050_220 Hb_000015_040--Hb_003050_220 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_000032_270 Hb_000032_270 Hb_000680_160--Hb_000032_270 Hb_000680_160--Hb_002078_350 Hb_003428_030 Hb_003428_030 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_000680_160--Hb_001579_220 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_012490_070 Hb_012490_070 Hb_001545_170--Hb_012490_070 Hb_089032_030 Hb_089032_030 Hb_001545_170--Hb_089032_030 Hb_000120_460 Hb_000120_460 Hb_001545_170--Hb_000120_460 Hb_003349_090 Hb_003349_090 Hb_001545_170--Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_001545_170--Hb_010812_120 Hb_002676_090 Hb_002676_090 Hb_001545_170--Hb_002676_090 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_001579_220--Hb_003050_220 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_002481_080 Hb_002481_080 Hb_000645_090--Hb_002481_080 Hb_001377_510 Hb_001377_510 Hb_000645_090--Hb_001377_510 Hb_155159_020 Hb_155159_020 Hb_000645_090--Hb_155159_020 Hb_022115_020 Hb_022115_020 Hb_000645_090--Hb_022115_020 Hb_000477_060 Hb_000477_060 Hb_000645_090--Hb_000477_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06886 6.08917 2.80437 7.35181 5.21794 7.6956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2548 11.6797 7.45807 8.87933 6.83137

CAGE analysis