Hb_000015_040

Information

Type -
Description -
Location Contig15: 26064-38252
Sequence    

Annotation

kegg
ID rcu:RCOM_0465040
description hypothetical protein
nr
ID XP_012089558.1
description PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SR29
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0465040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12491: 26237-26479 , PASA_asmbl_12492: 26492-27239 , PASA_asmbl_12493: 28709-29978 , PASA_asmbl_12494: 35364-36521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_040 0.0 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
2 Hb_029584_050 0.0477929506 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
3 Hb_001579_220 0.0648630318 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
4 Hb_003050_220 0.0710912564 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
5 Hb_006615_020 0.0728936518 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
6 Hb_002000_080 0.0739269861 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
7 Hb_003761_010 0.0743365157 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_003294_070 0.0751741539 - - hypothetical protein RCOM_1714550 [Ricinus communis]
9 Hb_002232_410 0.0753404396 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
10 Hb_005188_080 0.0760229918 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
11 Hb_165928_030 0.0768186365 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002078_350 0.0776197357 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
13 Hb_000030_030 0.0787670984 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
14 Hb_002481_080 0.0788039986 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
15 Hb_073973_100 0.078919821 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
16 Hb_000958_110 0.0802055415 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
17 Hb_008725_230 0.0817370466 - - PREDICTED: CTP synthase [Jatropha curcas]
18 Hb_001439_100 0.0825856465 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
19 Hb_023732_030 0.0866244709 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
20 Hb_002110_190 0.0878016476 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]

Gene co-expression network

sample Hb_000015_040 Hb_000015_040 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_003050_220 Hb_003050_220 Hb_000015_040--Hb_003050_220 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_001439_100 Hb_001439_100 Hb_029584_050--Hb_001439_100 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_001579_220--Hb_003050_220 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_000958_110 Hb_000958_110 Hb_003050_220--Hb_000958_110 Hb_006615_020--Hb_001902_140 Hb_000185_030 Hb_000185_030 Hb_006615_020--Hb_000185_030 Hb_000840_250 Hb_000840_250 Hb_006615_020--Hb_000840_250 Hb_001507_040 Hb_001507_040 Hb_006615_020--Hb_001507_040 Hb_001633_210 Hb_001633_210 Hb_006615_020--Hb_001633_210 Hb_165928_030 Hb_165928_030 Hb_002000_080--Hb_165928_030 Hb_011671_180 Hb_011671_180 Hb_002000_080--Hb_011671_180 Hb_002481_080 Hb_002481_080 Hb_002000_080--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_002000_080--Hb_073973_100 Hb_006907_130 Hb_006907_130 Hb_002000_080--Hb_006907_130 Hb_003294_070 Hb_003294_070 Hb_002000_080--Hb_003294_070 Hb_001205_240 Hb_001205_240 Hb_003761_010--Hb_001205_240 Hb_003761_010--Hb_000185_030 Hb_028285_010 Hb_028285_010 Hb_003761_010--Hb_028285_010 Hb_002205_110 Hb_002205_110 Hb_003761_010--Hb_002205_110 Hb_000028_370 Hb_000028_370 Hb_003761_010--Hb_000028_370 Hb_002232_410 Hb_002232_410 Hb_003761_010--Hb_002232_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42937 3.8279 2.44 4.00656 3.29903 4.21348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.44111 4.9914 4.76135 5.61268 3.36233

CAGE analysis