Hb_001268_410

Information

Type transcription factor
Description TF Family: TCP
Location Contig1268: 361160-362095
Sequence    

Annotation

kegg
ID rcu:RCOM_1447120
description transcription factor, putative
nr
ID XP_012067277.1
description PREDICTED: transcription factor TCP20 [Jatropha curcas]
swissprot
ID Q9LSD5
description Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1
trembl
ID A0A067L058
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26810 PE=4 SV=1
Gene Ontology
ID GO:0000987
description transcription factor tcp20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08142: 359140-362206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_410 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
2 Hb_029584_050 0.0882185833 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
3 Hb_002400_410 0.0889990422 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
4 Hb_119530_010 0.0897026849 - - -
5 Hb_000327_180 0.0931349717 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
6 Hb_005396_150 0.0954644568 - - protein binding protein, putative [Ricinus communis]
7 Hb_000917_230 0.0997099039 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
8 Hb_007416_120 0.1020858939 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
9 Hb_000352_310 0.1025205009 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
10 Hb_152371_010 0.1025715778 - - RNA-binding KH domain-containing protein [Theobroma cacao]
11 Hb_003847_030 0.1033040248 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
12 Hb_000015_040 0.1034714988 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
13 Hb_001571_050 0.1053962992 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
14 Hb_112198_010 0.1059423305 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
15 Hb_002000_080 0.1068397816 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
16 Hb_002193_030 0.1069457811 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
17 Hb_011674_020 0.1070507326 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
18 Hb_000120_080 0.1070902046 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
19 Hb_003294_070 0.1097877817 - - hypothetical protein RCOM_1714550 [Ricinus communis]
20 Hb_000095_080 0.11118291 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_410 Hb_001268_410 Hb_029584_050 Hb_029584_050 Hb_001268_410--Hb_029584_050 Hb_002400_410 Hb_002400_410 Hb_001268_410--Hb_002400_410 Hb_119530_010 Hb_119530_010 Hb_001268_410--Hb_119530_010 Hb_000327_180 Hb_000327_180 Hb_001268_410--Hb_000327_180 Hb_005396_150 Hb_005396_150 Hb_001268_410--Hb_005396_150 Hb_000917_230 Hb_000917_230 Hb_001268_410--Hb_000917_230 Hb_000015_040 Hb_000015_040 Hb_029584_050--Hb_000015_040 Hb_001439_100 Hb_001439_100 Hb_029584_050--Hb_001439_100 Hb_006615_020 Hb_006615_020 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_000920_300 Hb_000920_300 Hb_119530_010--Hb_000920_300 Hb_119530_010--Hb_007416_120 Hb_007747_080 Hb_007747_080 Hb_119530_010--Hb_007747_080 Hb_000504_070 Hb_000504_070 Hb_119530_010--Hb_000504_070 Hb_003847_030 Hb_003847_030 Hb_000327_180--Hb_003847_030 Hb_002799_070 Hb_002799_070 Hb_000327_180--Hb_002799_070 Hb_001195_200 Hb_001195_200 Hb_000327_180--Hb_001195_200 Hb_005054_110 Hb_005054_110 Hb_000327_180--Hb_005054_110 Hb_003376_250 Hb_003376_250 Hb_000327_180--Hb_003376_250 Hb_000603_080 Hb_000603_080 Hb_000327_180--Hb_000603_080 Hb_005396_150--Hb_007747_080 Hb_005634_010 Hb_005634_010 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_112198_010 Hb_112198_010 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_000140_290 Hb_000140_290 Hb_005396_150--Hb_000140_290 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_000917_230--Hb_005054_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.13387 12.6665 6.34822 12.0027 4.21105 11.5682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4469 11.3894 13.0922 19.1892 14.0163

CAGE analysis