Hb_005396_150

Information

Type -
Description -
Location Contig5396: 157255-163572
Sequence    

Annotation

kegg
ID rcu:RCOM_0704510
description protein binding protein, putative
nr
ID XP_002524389.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9C658
description Protein decapping 5 OS=Arabidopsis thaliana GN=DCP5 PE=1 SV=1
trembl
ID B9SEH0
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0704510 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein decapping 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47763: 157318-163847
cDNA
(Sanger)
(ID:Location)		 001_F16.ab1: 157320-160138 , 035_A09.ab1: 157320-160137 , 036_K07.ab1: 157320-160129

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_150 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_007747_080 0.0738417643 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005634_010 0.0789321388 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000049_210 0.0810211946 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
5 Hb_112198_010 0.0814592379 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
6 Hb_008725_230 0.0835285551 - - PREDICTED: CTP synthase [Jatropha curcas]
7 Hb_000140_290 0.0835527923 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
8 Hb_000556_120 0.0858393563 - - Spastin, putative [Ricinus communis]
9 Hb_001205_240 0.0858504041 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
10 Hb_000029_140 0.0878752888 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
11 Hb_003906_200 0.0898987135 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
12 Hb_010863_010 0.0899731594 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_003544_060 0.0917220066 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
14 Hb_001500_140 0.0921728421 - - pelota, putative [Ricinus communis]
15 Hb_007336_010 0.0924798099 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
16 Hb_149985_010 0.0930985423 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
17 Hb_004324_130 0.0934174985 - - polypyrimidine tract binding protein, putative [Ricinus communis]
18 Hb_010519_050 0.0937898699 - - galactokinase, putative [Ricinus communis]
19 Hb_011218_090 0.0940017698 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
20 Hb_000011_060 0.0942988083 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005396_150 Hb_005396_150 Hb_007747_080 Hb_007747_080 Hb_005396_150--Hb_007747_080 Hb_005634_010 Hb_005634_010 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_112198_010 Hb_112198_010 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_000140_290 Hb_000140_290 Hb_005396_150--Hb_000140_290 Hb_003544_030 Hb_003544_030 Hb_007747_080--Hb_003544_030 Hb_001157_200 Hb_001157_200 Hb_007747_080--Hb_001157_200 Hb_000984_170 Hb_000984_170 Hb_007747_080--Hb_000984_170 Hb_007747_080--Hb_112198_010 Hb_119530_010 Hb_119530_010 Hb_007747_080--Hb_119530_010 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_000011_060 Hb_000011_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_005054_110 Hb_005054_110 Hb_000049_210--Hb_005054_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_149985_010 Hb_149985_010 Hb_000049_210--Hb_149985_010 Hb_000890_150 Hb_000890_150 Hb_000049_210--Hb_000890_150 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_004435_030 Hb_004435_030 Hb_112198_010--Hb_004435_030 Hb_003906_200 Hb_003906_200 Hb_112198_010--Hb_003906_200 Hb_000917_230 Hb_000917_230 Hb_112198_010--Hb_000917_230 Hb_004030_080 Hb_004030_080 Hb_112198_010--Hb_004030_080 Hb_000868_090 Hb_000868_090 Hb_112198_010--Hb_000868_090 Hb_005582_040 Hb_005582_040 Hb_112198_010--Hb_005582_040 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_010142_020 Hb_010142_020 Hb_000140_290--Hb_010142_020 Hb_000140_290--Hb_000556_120 Hb_001500_140 Hb_001500_140 Hb_000140_290--Hb_001500_140 Hb_093458_040 Hb_093458_040 Hb_000140_290--Hb_093458_040 Hb_013726_090 Hb_013726_090 Hb_000140_290--Hb_013726_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.1187 57.3491 32.2065 66.0536 24.6909 38.5531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.7678 42.4079 56.604 71.0852 47.1929

CAGE analysis