Hb_007747_080

Information

Type -
Description -
Location Contig7747: 58777-65350
Sequence    

Annotation

kegg
ID rcu:RCOM_1259240
description hypothetical protein
nr
ID XP_002530530.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJF3
description mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2
trembl
ID B9SX11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1259240 PE=4 SV=1
Gene Ontology
ID GO:0009987
description mrna-decapping enzyme-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57740: 58823-65438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005396_150 0.0738417643 - - protein binding protein, putative [Ricinus communis]
3 Hb_003544_030 0.0761207693 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
4 Hb_001157_200 0.0784524651 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
5 Hb_000984_170 0.0818874556 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
6 Hb_112198_010 0.0824190453 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
7 Hb_119530_010 0.0835290314 - - -
8 Hb_000089_180 0.08363016 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
9 Hb_000981_030 0.0848048416 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
10 Hb_005663_110 0.0857535016 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
11 Hb_002344_060 0.0873098974 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
12 Hb_003544_060 0.0873918376 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
13 Hb_003906_200 0.0876306019 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
14 Hb_002391_210 0.0883461772 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
15 Hb_001500_100 0.0886982891 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002456_010 0.0903881097 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
17 Hb_006452_120 0.0904749896 - - PREDICTED: protein FAM188A [Jatropha curcas]
18 Hb_004677_050 0.0914158267 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
19 Hb_004030_080 0.09238301 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
20 Hb_004435_030 0.0935150706 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]

Gene co-expression network

sample Hb_007747_080 Hb_007747_080 Hb_005396_150 Hb_005396_150 Hb_007747_080--Hb_005396_150 Hb_003544_030 Hb_003544_030 Hb_007747_080--Hb_003544_030 Hb_001157_200 Hb_001157_200 Hb_007747_080--Hb_001157_200 Hb_000984_170 Hb_000984_170 Hb_007747_080--Hb_000984_170 Hb_112198_010 Hb_112198_010 Hb_007747_080--Hb_112198_010 Hb_119530_010 Hb_119530_010 Hb_007747_080--Hb_119530_010 Hb_005634_010 Hb_005634_010 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_000140_290 Hb_000140_290 Hb_005396_150--Hb_000140_290 Hb_000327_250 Hb_000327_250 Hb_003544_030--Hb_000327_250 Hb_005663_110 Hb_005663_110 Hb_003544_030--Hb_005663_110 Hb_001434_080 Hb_001434_080 Hb_003544_030--Hb_001434_080 Hb_016347_010 Hb_016347_010 Hb_003544_030--Hb_016347_010 Hb_006452_120 Hb_006452_120 Hb_003544_030--Hb_006452_120 Hb_017387_010 Hb_017387_010 Hb_003544_030--Hb_017387_010 Hb_132880_040 Hb_132880_040 Hb_001157_200--Hb_132880_040 Hb_001157_200--Hb_003544_030 Hb_001157_200--Hb_000984_170 Hb_001157_200--Hb_006452_120 Hb_001157_200--Hb_005663_110 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_000984_170--Hb_005663_110 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_004435_030 Hb_004435_030 Hb_112198_010--Hb_004435_030 Hb_003906_200 Hb_003906_200 Hb_112198_010--Hb_003906_200 Hb_000917_230 Hb_000917_230 Hb_112198_010--Hb_000917_230 Hb_112198_010--Hb_004030_080 Hb_000868_090 Hb_000868_090 Hb_112198_010--Hb_000868_090 Hb_005582_040 Hb_005582_040 Hb_112198_010--Hb_005582_040 Hb_002400_410 Hb_002400_410 Hb_119530_010--Hb_002400_410 Hb_000920_300 Hb_000920_300 Hb_119530_010--Hb_000920_300 Hb_007416_120 Hb_007416_120 Hb_119530_010--Hb_007416_120 Hb_000504_070 Hb_000504_070 Hb_119530_010--Hb_000504_070 Hb_001268_410 Hb_001268_410 Hb_119530_010--Hb_001268_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.6021 28.8035 12.9259 28.8147 9.70039 16.2592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9554 15.244 17.1089 33.3563 17.4541

CAGE analysis