Hb_004030_080

Information

Type -
Description -
Location Contig4030: 89477-107064
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09400g
description POPTRDRAFT_831912; hypothetical protein
nr
ID KDP24546.1
description hypothetical protein JCGZ_25110 [Jatropha curcas]
swissprot
ID Q52EB3
description Serine/threonine-protein kinase ATG1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG1 PE=1 SV=1
trembl
ID A0A067JKN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25110 PE=4 SV=1
Gene Ontology
ID GO:0004683
description serine threonine-protein kinase atg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39966: 89193-89580 , PASA_asmbl_39968: 89657-103473 , PASA_asmbl_39969: 92709-93242 , PASA_asmbl_39970: 96276-96428 , PASA_asmbl_39971: 103743-106617
cDNA
(Sanger)
(ID:Location)		 014_J05.ab1: 89657-97172

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004030_080 0.0 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
2 Hb_002830_010 0.0544680701 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
3 Hb_000984_170 0.0558882919 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
4 Hb_005582_040 0.0559767132 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
5 Hb_006452_120 0.0564514715 - - PREDICTED: protein FAM188A [Jatropha curcas]
6 Hb_000028_130 0.0596725069 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
7 Hb_011016_050 0.0603223431 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
8 Hb_002890_130 0.0615512978 - - tip120, putative [Ricinus communis]
9 Hb_010515_020 0.0638305231 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
10 Hb_002411_110 0.0664243025 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
11 Hb_002989_020 0.0668928686 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
12 Hb_000537_050 0.0670651404 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
13 Hb_003906_200 0.0673855196 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
14 Hb_001635_120 0.0683959482 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
15 Hb_008948_020 0.0688680761 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
16 Hb_003544_060 0.0691848852 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
17 Hb_002234_090 0.0698250183 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
18 Hb_066920_030 0.0701911908 - - PREDICTED: adagio protein 1 [Jatropha curcas]
19 Hb_002071_070 0.070646063 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
20 Hb_001481_060 0.0708724153 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004030_080 Hb_004030_080 Hb_002830_010 Hb_002830_010 Hb_004030_080--Hb_002830_010 Hb_000984_170 Hb_000984_170 Hb_004030_080--Hb_000984_170 Hb_005582_040 Hb_005582_040 Hb_004030_080--Hb_005582_040 Hb_006452_120 Hb_006452_120 Hb_004030_080--Hb_006452_120 Hb_000028_130 Hb_000028_130 Hb_004030_080--Hb_000028_130 Hb_011016_050 Hb_011016_050 Hb_004030_080--Hb_011016_050 Hb_002830_010--Hb_005582_040 Hb_002071_070 Hb_002071_070 Hb_002830_010--Hb_002071_070 Hb_010515_020 Hb_010515_020 Hb_002830_010--Hb_010515_020 Hb_010068_080 Hb_010068_080 Hb_002830_010--Hb_010068_080 Hb_001304_110 Hb_001304_110 Hb_002830_010--Hb_001304_110 Hb_004677_050 Hb_004677_050 Hb_000984_170--Hb_004677_050 Hb_005663_110 Hb_005663_110 Hb_000984_170--Hb_005663_110 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_005582_040--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_001635_120 Hb_001635_120 Hb_005582_040--Hb_001635_120 Hb_006452_120--Hb_010515_020 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_000614_240 Hb_000614_240 Hb_011016_050--Hb_000614_240 Hb_000140_210 Hb_000140_210 Hb_011016_050--Hb_000140_210 Hb_009296_040 Hb_009296_040 Hb_011016_050--Hb_009296_040 Hb_010142_020 Hb_010142_020 Hb_011016_050--Hb_010142_020 Hb_000083_120 Hb_000083_120 Hb_011016_050--Hb_000083_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.17011 8.86602 5.38577 8.64405 4.55591 6.03587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91479 4.86501 7.27089 8.51354 7.55521

CAGE analysis