Hb_002471_290

Information

Type -
Description -
Location Contig2471: 298907-305781
Sequence    

Annotation

kegg
ID pop:POPTR_0008s13630g
description POPTRDRAFT_419559; hypothetical protein
nr
ID XP_012072126.1
description PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
swissprot
ID A7RJI7
description Vacuolar fusion protein CCZ1 homolog OS=Nematostella vectensis GN=v1g238755 PE=3 SV=1
trembl
ID A0A061EGC2
description F23A5.27 isoform 2 OS=Theobroma cacao GN=TCM_011272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25679: 299016-300213 , PASA_asmbl_25680: 300259-303392 , PASA_asmbl_25682: 304590-305771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_290 0.0 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
2 Hb_005147_030 0.0474325634 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
3 Hb_009079_030 0.0645611563 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
4 Hb_002400_410 0.0775186582 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
5 Hb_003294_070 0.0776933101 - - hypothetical protein RCOM_1714550 [Ricinus communis]
6 Hb_000556_120 0.0797896021 - - Spastin, putative [Ricinus communis]
7 Hb_003647_130 0.0799556531 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
8 Hb_001473_180 0.080895311 - - glutathione reductase [Hevea brasiliensis]
9 Hb_002456_010 0.0882510566 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
10 Hb_000329_060 0.0895873876 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
11 Hb_007416_120 0.0897147642 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
12 Hb_010422_010 0.0904445464 - - phosphofructokinase [Hevea brasiliensis]
13 Hb_002600_150 0.0909354679 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
14 Hb_002000_080 0.0911514587 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
15 Hb_001999_310 0.091795652 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
16 Hb_004254_090 0.0919571019 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
17 Hb_073973_100 0.092112367 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
18 Hb_011674_020 0.092771136 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
19 Hb_000028_180 0.093758715 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
20 Hb_000614_240 0.0941040335 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]

Gene co-expression network

sample Hb_002471_290 Hb_002471_290 Hb_005147_030 Hb_005147_030 Hb_002471_290--Hb_005147_030 Hb_009079_030 Hb_009079_030 Hb_002471_290--Hb_009079_030 Hb_002400_410 Hb_002400_410 Hb_002471_290--Hb_002400_410 Hb_003294_070 Hb_003294_070 Hb_002471_290--Hb_003294_070 Hb_000556_120 Hb_000556_120 Hb_002471_290--Hb_000556_120 Hb_003647_130 Hb_003647_130 Hb_002471_290--Hb_003647_130 Hb_001473_180 Hb_001473_180 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_005147_030--Hb_009079_030 Hb_000329_060 Hb_000329_060 Hb_005147_030--Hb_000329_060 Hb_002044_150 Hb_002044_150 Hb_005147_030--Hb_002044_150 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_009079_030--Hb_003294_070 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_009079_030--Hb_001473_180 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_119530_010 Hb_119530_010 Hb_002400_410--Hb_119530_010 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_005634_010 Hb_005634_010 Hb_000556_120--Hb_005634_010 Hb_000556_120--Hb_000329_060 Hb_000140_290 Hb_000140_290 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_001232_010 Hb_001232_010 Hb_003647_130--Hb_001232_010 Hb_000614_240 Hb_000614_240 Hb_003647_130--Hb_000614_240 Hb_003647_130--Hb_001473_180 Hb_003647_130--Hb_003294_070 Hb_017862_020 Hb_017862_020 Hb_003647_130--Hb_017862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.84934 6.78953 7.10261 6.50141 6.29381 7.10429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5874 7.72079 8.81689 17.2653 8.26245

CAGE analysis