Hb_005147_030

Information

Type -
Description -
Location Contig5147: 24276-27711
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23390g
description hypothetical protein
nr
ID XP_006385046.1
description hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
swissprot
ID P52420
description Phosphoribosylamine--glycine ligase, chloroplastic OS=Arabidopsis thaliana GN=PUR2 PE=2 SV=2
trembl
ID B9N0E9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s23390g PE=3 SV=1
Gene Ontology
ID GO:0009570
description phosphoribosylamine--glycine ligase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46468: 24375-27689
cDNA
(Sanger)
(ID:Location)		 012_I06.ab1: 24375-25482 , 015_E09.ab1: 24387-24936 , 049_B03.ab1: 24440-24951 , 050_M21.ab1: 24437-24914 , 053_G19.ab1: 24437-25643

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005147_030 0.0 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
2 Hb_002471_290 0.0474325634 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
3 Hb_001473_180 0.0762462579 - - glutathione reductase [Hevea brasiliensis]
4 Hb_002600_150 0.0790711224 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
5 Hb_009079_030 0.0803514994 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
6 Hb_000329_060 0.0806831768 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
7 Hb_002044_150 0.0849694718 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
8 Hb_011674_020 0.0893123492 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
9 Hb_005357_160 0.0904016258 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
10 Hb_019053_030 0.0915823712 - - PREDICTED: sulfite oxidase [Jatropha curcas]
11 Hb_003647_130 0.0917600344 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
12 Hb_001168_050 0.0923761524 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
13 Hb_001999_310 0.0935394902 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
14 Hb_004254_090 0.0940810356 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
15 Hb_000032_280 0.0944425258 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
16 Hb_004846_220 0.0949932797 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
17 Hb_000053_040 0.095152059 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
18 Hb_000556_120 0.0957277231 - - Spastin, putative [Ricinus communis]
19 Hb_001301_150 0.0960017978 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
20 Hb_007380_060 0.096131841 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]

Gene co-expression network

sample Hb_005147_030 Hb_005147_030 Hb_002471_290 Hb_002471_290 Hb_005147_030--Hb_002471_290 Hb_001473_180 Hb_001473_180 Hb_005147_030--Hb_001473_180 Hb_002600_150 Hb_002600_150 Hb_005147_030--Hb_002600_150 Hb_009079_030 Hb_009079_030 Hb_005147_030--Hb_009079_030 Hb_000329_060 Hb_000329_060 Hb_005147_030--Hb_000329_060 Hb_002044_150 Hb_002044_150 Hb_005147_030--Hb_002044_150 Hb_002471_290--Hb_009079_030 Hb_002400_410 Hb_002400_410 Hb_002471_290--Hb_002400_410 Hb_003294_070 Hb_003294_070 Hb_002471_290--Hb_003294_070 Hb_000556_120 Hb_000556_120 Hb_002471_290--Hb_000556_120 Hb_003647_130 Hb_003647_130 Hb_002471_290--Hb_003647_130 Hb_000592_030 Hb_000592_030 Hb_001473_180--Hb_000592_030 Hb_001473_180--Hb_002600_150 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_001473_180--Hb_009079_030 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_002815_030 Hb_002815_030 Hb_001473_180--Hb_002815_030 Hb_000053_040 Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_000138_100 Hb_000138_100 Hb_002600_150--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002600_150--Hb_013726_090 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_009079_030--Hb_003294_070 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_000329_060--Hb_000556_120 Hb_000381_120 Hb_000381_120 Hb_000329_060--Hb_000381_120 Hb_000140_290 Hb_000140_290 Hb_000329_060--Hb_000140_290 Hb_005634_010 Hb_005634_010 Hb_000329_060--Hb_005634_010 Hb_005357_160 Hb_005357_160 Hb_000329_060--Hb_005357_160 Hb_000836_460 Hb_000836_460 Hb_000329_060--Hb_000836_460 Hb_007479_040 Hb_007479_040 Hb_002044_150--Hb_007479_040 Hb_004254_090 Hb_004254_090 Hb_002044_150--Hb_004254_090 Hb_026198_070 Hb_026198_070 Hb_002044_150--Hb_026198_070 Hb_168978_030 Hb_168978_030 Hb_002044_150--Hb_168978_030 Hb_000207_050 Hb_000207_050 Hb_002044_150--Hb_000207_050 Hb_002044_150--Hb_000138_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2494 9.70054 14.6375 13.0388 13.25 14.1563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8236 12.9196 16.5219 33.8964 19.1103

CAGE analysis