Hb_000053_040

Information

Type -
Description -
Location Contig53: 72506-88427
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G3153000
description hypothetical protein
nr
ID KDO41981.1
description hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DSG5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010392mg PE=4 SV=1
Gene Ontology
ID GO:0016905
description stomatal cytokinesis-defective 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47289: 42371-84520 , PASA_asmbl_47290: 84757-116794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_040 0.0 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
2 Hb_002600_150 0.0472786078 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
3 Hb_000138_100 0.0546818604 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
4 Hb_056691_060 0.0592398992 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
5 Hb_001417_030 0.0659431178 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_000011_060 0.0689483065 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
7 Hb_003734_010 0.0697162079 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
8 Hb_000872_010 0.0711551345 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
9 Hb_000592_030 0.0716374468 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
10 Hb_001999_310 0.0718476382 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
11 Hb_009270_020 0.0718513421 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
12 Hb_013726_090 0.0720558955 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
13 Hb_012733_030 0.0721105389 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
14 Hb_000406_200 0.0722082019 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
15 Hb_001876_010 0.0723083621 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
16 Hb_003517_040 0.0726783415 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
17 Hb_001357_020 0.0727295011 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
18 Hb_019616_020 0.0728105069 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
19 Hb_011674_020 0.0739635388 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
20 Hb_008387_020 0.0740799607 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000053_040 Hb_000053_040 Hb_002600_150 Hb_002600_150 Hb_000053_040--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_000053_040--Hb_000138_100 Hb_056691_060 Hb_056691_060 Hb_000053_040--Hb_056691_060 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_003734_010 Hb_003734_010 Hb_000053_040--Hb_003734_010 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_002600_150--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_000111_290 Hb_000111_290 Hb_001417_030--Hb_000111_290 Hb_003913_070 Hb_003913_070 Hb_001417_030--Hb_003913_070 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_003411_040 Hb_003411_040 Hb_001417_030--Hb_003411_040 Hb_000614_240 Hb_000614_240 Hb_001417_030--Hb_000614_240 Hb_001876_010 Hb_001876_010 Hb_000011_060--Hb_001876_010 Hb_000011_060--Hb_013726_090 Hb_000011_060--Hb_000614_240 Hb_000984_170 Hb_000984_170 Hb_000011_060--Hb_000984_170 Hb_010142_020 Hb_010142_020 Hb_000011_060--Hb_010142_020 Hb_001105_020 Hb_001105_020 Hb_000011_060--Hb_001105_020 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_009976_020 Hb_009976_020 Hb_003734_010--Hb_009976_020 Hb_003734_010--Hb_003517_040 Hb_003734_010--Hb_012760_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.5078 1.4626 1.13899 1.79362 1.7451 1.89647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81966 1.38221 1.53008 2.7095 2.5814

CAGE analysis