Hb_000830_030

Information

Type -
Description -
Location Contig830: 75075-81124
Sequence    

Annotation

kegg
ID rcu:RCOM_0945540
description hypothetical protein
nr
ID XP_012084879.1
description PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RL45
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0945540 PE=4 SV=1
Gene Ontology
ID GO:0000278
description atp-binding cassette sub-family a member

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59805: 75234-76700 , PASA_asmbl_59806: 76734-78167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000830_030 0.0 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
2 Hb_000156_010 0.0619425061 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
3 Hb_008484_060 0.0623810902 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
4 Hb_004109_080 0.0685722698 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
5 Hb_000022_020 0.0691016513 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
6 Hb_002785_050 0.0692642947 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
7 Hb_056691_060 0.0703838206 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
8 Hb_012498_010 0.0708677048 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
9 Hb_105328_020 0.0712910399 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
10 Hb_004567_090 0.0715845986 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
11 Hb_015807_050 0.0717395325 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
12 Hb_002414_050 0.0727343434 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
13 Hb_000035_470 0.0731132353 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
14 Hb_168978_030 0.0737317577 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
15 Hb_032050_040 0.0741745497 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
16 Hb_009976_020 0.0748398563 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
17 Hb_000613_050 0.0753448625 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
18 Hb_054865_150 0.0759401348 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
19 Hb_000170_090 0.0766566494 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
20 Hb_001655_030 0.0771726479 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000830_030 Hb_000830_030 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_008484_060 Hb_008484_060 Hb_000830_030--Hb_008484_060 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_000022_020 Hb_000022_020 Hb_000830_030--Hb_000022_020 Hb_002785_050 Hb_002785_050 Hb_000830_030--Hb_002785_050 Hb_056691_060 Hb_056691_060 Hb_000830_030--Hb_056691_060 Hb_011037_030 Hb_011037_030 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_054865_150 Hb_054865_150 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_009976_020 Hb_009976_020 Hb_008484_060--Hb_009976_020 Hb_003734_010 Hb_003734_010 Hb_008484_060--Hb_003734_010 Hb_012760_100 Hb_012760_100 Hb_008484_060--Hb_012760_100 Hb_011231_020 Hb_011231_020 Hb_008484_060--Hb_011231_020 Hb_008484_060--Hb_056691_060 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_004109_080--Hb_012498_010 Hb_004109_080--Hb_005291_050 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_002263_020 Hb_002263_020 Hb_004109_080--Hb_002263_020 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200 Hb_002414_050 Hb_002414_050 Hb_000022_020--Hb_002414_050 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000022_020--Hb_004452_110 Hb_001662_100 Hb_001662_100 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160 Hb_002273_120 Hb_002273_120 Hb_002785_050--Hb_002273_120 Hb_009529_030 Hb_009529_030 Hb_002785_050--Hb_009529_030 Hb_032050_040 Hb_032050_040 Hb_002785_050--Hb_032050_040 Hb_001882_050 Hb_001882_050 Hb_002785_050--Hb_001882_050 Hb_000260_330 Hb_000260_330 Hb_002785_050--Hb_000260_330 Hb_056691_060--Hb_012760_100 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73973 4.97838 5.46328 8.09734 6.20723 10.4496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.10492 5.95527 5.23297 7.68827 8.41645

CAGE analysis