Hb_012733_030

Information

Type -
Description -
Location Contig12733: 55353-67412
Sequence    

Annotation

kegg
ID pop:POPTR_0001s19390g
description hypothetical protein
nr
ID EEC76957.1
description hypothetical protein OsI_15243 [Oryza sativa Indica Group]
swissprot
ID Q7X6P3
description Protein root UVB sensitive 1, chloroplastic OS=Arabidopsis thaliana GN=RUS1 PE=1 SV=1
trembl
ID M0TFF8
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein root uvb sensitive chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08343: 55909-56179 , PASA_asmbl_08344: 56185-56691 , PASA_asmbl_08347: 62309-62814 , PASA_asmbl_08348: 63400-67325 , PASA_asmbl_08349: 63400-67325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012733_030 0.0 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
2 Hb_007380_060 0.0516035848 - - hypothetical protein POPTR_0006s00280g [Populus trichocarpa]
3 Hb_002600_150 0.0533061931 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
4 Hb_007426_110 0.0624995389 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
5 Hb_001442_040 0.063839815 - - PREDICTED: peroxisome biogenesis factor 10 isoform X1 [Jatropha curcas]
6 Hb_000008_290 0.0700586261 - - PREDICTED: protein SAND [Jatropha curcas]
7 Hb_000053_040 0.0721105389 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
8 Hb_003734_010 0.072476388 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
9 Hb_000592_030 0.0735071691 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
10 Hb_001473_180 0.0739269759 - - glutathione reductase [Hevea brasiliensis]
11 Hb_168978_030 0.0790743614 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
12 Hb_003847_130 0.0790766811 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
13 Hb_009270_020 0.080483341 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
14 Hb_004963_030 0.0808060021 - - PREDICTED: twinkle homolog protein, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_000617_180 0.0808966428 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
16 Hb_001449_040 0.081374023 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
17 Hb_000005_190 0.0814674098 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
18 Hb_004846_220 0.0816879466 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
19 Hb_000138_100 0.0826075276 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
20 Hb_000830_030 0.0827873356 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]

Gene co-expression network

sample Hb_012733_030 Hb_012733_030 Hb_007380_060 Hb_007380_060 Hb_012733_030--Hb_007380_060 Hb_002600_150 Hb_002600_150 Hb_012733_030--Hb_002600_150 Hb_007426_110 Hb_007426_110 Hb_012733_030--Hb_007426_110 Hb_001442_040 Hb_001442_040 Hb_012733_030--Hb_001442_040 Hb_000008_290 Hb_000008_290 Hb_012733_030--Hb_000008_290 Hb_000053_040 Hb_000053_040 Hb_012733_030--Hb_000053_040 Hb_007380_060--Hb_002600_150 Hb_001999_310 Hb_001999_310 Hb_007380_060--Hb_001999_310 Hb_011674_020 Hb_011674_020 Hb_007380_060--Hb_011674_020 Hb_168978_030 Hb_168978_030 Hb_007380_060--Hb_168978_030 Hb_013726_090 Hb_013726_090 Hb_007380_060--Hb_013726_090 Hb_002600_150--Hb_000053_040 Hb_001357_020 Hb_001357_020 Hb_002600_150--Hb_001357_020 Hb_000138_100 Hb_000138_100 Hb_002600_150--Hb_000138_100 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_006483_110 Hb_006483_110 Hb_007426_110--Hb_006483_110 Hb_028960_020 Hb_028960_020 Hb_007426_110--Hb_028960_020 Hb_008387_020 Hb_008387_020 Hb_007426_110--Hb_008387_020 Hb_002218_090 Hb_002218_090 Hb_007426_110--Hb_002218_090 Hb_002263_020 Hb_002263_020 Hb_007426_110--Hb_002263_020 Hb_001655_030 Hb_001655_030 Hb_007426_110--Hb_001655_030 Hb_004963_030 Hb_004963_030 Hb_001442_040--Hb_004963_030 Hb_003847_130 Hb_003847_130 Hb_001442_040--Hb_003847_130 Hb_002592_060 Hb_002592_060 Hb_001442_040--Hb_002592_060 Hb_001301_100 Hb_001301_100 Hb_001442_040--Hb_001301_100 Hb_001014_160 Hb_001014_160 Hb_001442_040--Hb_001014_160 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_000053_040--Hb_000138_100 Hb_056691_060 Hb_056691_060 Hb_000053_040--Hb_056691_060 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_003734_010 Hb_003734_010 Hb_000053_040--Hb_003734_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46489 2.67677 3.00039 2.70867 3.04704 5.29939
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24391 2.8668 3.04795 5.65347 4.95894

CAGE analysis