Hb_005357_160

Information

Type -
Description -
Location Contig5357: 120274-121320
Sequence    

Annotation

kegg
ID rcu:RCOM_0905660
description Tumor suppressor candidate, putative
nr
ID XP_012091400.1
description PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
swissprot
ID Q9SYB5
description Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B OS=Arabidopsis thaliana GN=OST3B PE=2 SV=1
trembl
ID A0A067JDH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21259 PE=4 SV=1
Gene Ontology
ID GO:0005576
description probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47557: 120213-121529
cDNA
(Sanger)
(ID:Location)		 044_O06.ab1: 120213-121007 , 045_K19.ab1: 120213-120980

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_160 0.0 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
2 Hb_011214_090 0.0655041352 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
3 Hb_000329_060 0.0704231733 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
4 Hb_000138_100 0.072351736 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
5 Hb_013726_090 0.0728058707 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
6 Hb_004846_220 0.0750214514 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
7 Hb_000053_040 0.0750837777 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
8 Hb_002600_150 0.0757187041 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
9 Hb_005725_130 0.0770007606 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
10 Hb_011674_020 0.0793237045 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
11 Hb_168978_030 0.0796136587 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
12 Hb_000640_170 0.080738173 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_000111_320 0.0807647277 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
14 Hb_009898_050 0.0827342777 - - PREDICTED: beta-taxilin [Jatropha curcas]
15 Hb_001301_150 0.0837400973 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
16 Hb_003883_060 0.0847403181 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
17 Hb_019616_020 0.0847812208 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
18 Hb_000140_290 0.0856501988 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
19 Hb_002044_150 0.0874861263 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
20 Hb_001247_310 0.0877409788 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]

Gene co-expression network

sample Hb_005357_160 Hb_005357_160 Hb_011214_090 Hb_011214_090 Hb_005357_160--Hb_011214_090 Hb_000329_060 Hb_000329_060 Hb_005357_160--Hb_000329_060 Hb_000138_100 Hb_000138_100 Hb_005357_160--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_005357_160--Hb_013726_090 Hb_004846_220 Hb_004846_220 Hb_005357_160--Hb_004846_220 Hb_000053_040 Hb_000053_040 Hb_005357_160--Hb_000053_040 Hb_023371_020 Hb_023371_020 Hb_011214_090--Hb_023371_020 Hb_009898_050 Hb_009898_050 Hb_011214_090--Hb_009898_050 Hb_000120_370 Hb_000120_370 Hb_011214_090--Hb_000120_370 Hb_005725_130 Hb_005725_130 Hb_011214_090--Hb_005725_130 Hb_000521_250 Hb_000521_250 Hb_011214_090--Hb_000521_250 Hb_000556_120 Hb_000556_120 Hb_000329_060--Hb_000556_120 Hb_000381_120 Hb_000381_120 Hb_000329_060--Hb_000381_120 Hb_000140_290 Hb_000140_290 Hb_000329_060--Hb_000140_290 Hb_005634_010 Hb_005634_010 Hb_000329_060--Hb_005634_010 Hb_000836_460 Hb_000836_460 Hb_000329_060--Hb_000836_460 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_013726_090--Hb_000138_100 Hb_003883_060 Hb_003883_060 Hb_013726_090--Hb_003883_060 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010 Hb_041290_020 Hb_041290_020 Hb_004846_220--Hb_041290_020 Hb_002592_060 Hb_002592_060 Hb_004846_220--Hb_002592_060 Hb_001021_150 Hb_001021_150 Hb_004846_220--Hb_001021_150 Hb_004846_220--Hb_004254_090 Hb_006483_110 Hb_006483_110 Hb_004846_220--Hb_006483_110 Hb_000053_040--Hb_002600_150 Hb_056691_060 Hb_056691_060 Hb_000053_040--Hb_056691_060 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000053_040--Hb_000011_060 Hb_003734_010 Hb_003734_010 Hb_000053_040--Hb_003734_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.379 22.584 38.1226 54.0564 39.2557 43.2423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.0974 31.14 34.2689 66.419 58.5764

CAGE analysis