Hb_011214_090

Information

Type -
Description -
Location Contig11214: 83492-87064
Sequence    

Annotation

kegg
ID rcu:RCOM_0753060
description Aspartate carbamoyltransferase 2, chloroplast precursor, putative (EC:2.1.3.2)
nr
ID XP_012070892.1
description PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q43087
description Aspartate carbamoyltransferase 2, chloroplastic OS=Pisum sativum GN=PYRB2 PE=2 SV=1
trembl
ID A0A067KSR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00934 PE=3 SV=1
Gene Ontology
ID GO:0005829
description aspartate carbamoyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03656: 83569-86978 , PASA_asmbl_03657: 86542-86697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011214_090 0.0 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
2 Hb_005357_160 0.0655041352 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
3 Hb_023371_020 0.0843670453 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
4 Hb_009898_050 0.0894517258 - - PREDICTED: beta-taxilin [Jatropha curcas]
5 Hb_000120_370 0.0899903176 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
6 Hb_005725_130 0.0900244072 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
7 Hb_000521_250 0.0946166343 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
8 Hb_026198_070 0.0946717821 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
9 Hb_000140_290 0.0980997937 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
10 Hb_007481_010 0.0992553065 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
11 Hb_001512_010 0.0998648136 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
12 Hb_000329_060 0.1009449744 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
13 Hb_133702_010 0.1010327421 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_006153_070 0.1015877086 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
15 Hb_001269_330 0.1019268182 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
16 Hb_000022_020 0.1027235508 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
17 Hb_000138_100 0.1027707703 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
18 Hb_023313_030 0.1030628332 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001951_150 0.1033026891 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
20 Hb_019616_020 0.103878281 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_011214_090 Hb_011214_090 Hb_005357_160 Hb_005357_160 Hb_011214_090--Hb_005357_160 Hb_023371_020 Hb_023371_020 Hb_011214_090--Hb_023371_020 Hb_009898_050 Hb_009898_050 Hb_011214_090--Hb_009898_050 Hb_000120_370 Hb_000120_370 Hb_011214_090--Hb_000120_370 Hb_005725_130 Hb_005725_130 Hb_011214_090--Hb_005725_130 Hb_000521_250 Hb_000521_250 Hb_011214_090--Hb_000521_250 Hb_000329_060 Hb_000329_060 Hb_005357_160--Hb_000329_060 Hb_000138_100 Hb_000138_100 Hb_005357_160--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_005357_160--Hb_013726_090 Hb_004846_220 Hb_004846_220 Hb_005357_160--Hb_004846_220 Hb_000053_040 Hb_000053_040 Hb_005357_160--Hb_000053_040 Hb_003878_090 Hb_003878_090 Hb_023371_020--Hb_003878_090 Hb_001141_420 Hb_001141_420 Hb_023371_020--Hb_001141_420 Hb_004545_110 Hb_004545_110 Hb_023371_020--Hb_004545_110 Hb_004157_050 Hb_004157_050 Hb_023371_020--Hb_004157_050 Hb_133702_010 Hb_133702_010 Hb_023371_020--Hb_133702_010 Hb_000260_350 Hb_000260_350 Hb_023371_020--Hb_000260_350 Hb_006153_070 Hb_006153_070 Hb_009898_050--Hb_006153_070 Hb_000110_310 Hb_000110_310 Hb_009898_050--Hb_000110_310 Hb_008616_050 Hb_008616_050 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000640_170 Hb_000640_170 Hb_009898_050--Hb_000640_170 Hb_000579_120 Hb_000579_120 Hb_009898_050--Hb_000579_120 Hb_000115_150 Hb_000115_150 Hb_000120_370--Hb_000115_150 Hb_000120_370--Hb_005725_130 Hb_001828_180 Hb_001828_180 Hb_000120_370--Hb_001828_180 Hb_002301_100 Hb_002301_100 Hb_000120_370--Hb_002301_100 Hb_000167_010 Hb_000167_010 Hb_000120_370--Hb_000167_010 Hb_005648_010 Hb_005648_010 Hb_000120_370--Hb_005648_010 Hb_003878_150 Hb_003878_150 Hb_005725_130--Hb_003878_150 Hb_001242_120 Hb_001242_120 Hb_005725_130--Hb_001242_120 Hb_009569_040 Hb_009569_040 Hb_005725_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_005725_130--Hb_002928_090 Hb_001662_100 Hb_001662_100 Hb_005725_130--Hb_001662_100 Hb_000708_030 Hb_000708_030 Hb_000521_250--Hb_000708_030 Hb_000212_230 Hb_000212_230 Hb_000521_250--Hb_000212_230 Hb_002414_050 Hb_002414_050 Hb_000521_250--Hb_002414_050 Hb_000521_250--Hb_000138_100 Hb_003680_120 Hb_003680_120 Hb_000521_250--Hb_003680_120 Hb_003883_060 Hb_003883_060 Hb_000521_250--Hb_003883_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.15804 4.48554 8.08339 14.569 8.67588 7.73503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9748 6.03802 7.61946 10.3891 12.2291

CAGE analysis