Hb_003680_120

Information

Type -
Description -
Location Contig3680: 101787-117117
Sequence    

Annotation

kegg
ID rcu:RCOM_0840110
description ubiquitin-protein ligase, putative
nr
ID XP_012082525.1
description PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
swissprot
ID Q9SCQ2
description E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1
trembl
ID A0A067KAF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16614 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37836: 101820-112063 , PASA_asmbl_37837: 115255-116768 , PASA_asmbl_37838: 115255-116772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_120 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL7 [Jatropha curcas]
2 Hb_000327_270 0.0480740823 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
3 Hb_000708_030 0.0539745116 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
4 Hb_000665_100 0.0601485896 - - PREDICTED: neurochondrin [Jatropha curcas]
5 Hb_002110_190 0.0607250828 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
6 Hb_011037_030 0.0607454951 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
7 Hb_005730_040 0.0646371465 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
8 Hb_011386_010 0.0649481321 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_001304_110 0.0672120864 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
10 Hb_000699_030 0.0684811582 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
11 Hb_007479_040 0.0691056763 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003504_030 0.0695251327 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
13 Hb_000590_050 0.069684204 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
14 Hb_005054_110 0.0702532954 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
15 Hb_000732_010 0.0702919274 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
16 Hb_000078_120 0.0706852673 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
17 Hb_065525_040 0.0707789988 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
18 Hb_001205_240 0.0721012754 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
19 Hb_000521_250 0.0726523778 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
20 Hb_000318_250 0.0728289762 - - PREDICTED: uncharacterized protein LOC105634251 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_120 Hb_003680_120 Hb_000327_270 Hb_000327_270 Hb_003680_120--Hb_000327_270 Hb_000708_030 Hb_000708_030 Hb_003680_120--Hb_000708_030 Hb_000665_100 Hb_000665_100 Hb_003680_120--Hb_000665_100 Hb_002110_190 Hb_002110_190 Hb_003680_120--Hb_002110_190 Hb_011037_030 Hb_011037_030 Hb_003680_120--Hb_011037_030 Hb_005730_040 Hb_005730_040 Hb_003680_120--Hb_005730_040 Hb_000590_050 Hb_000590_050 Hb_000327_270--Hb_000590_050 Hb_003504_030 Hb_003504_030 Hb_000327_270--Hb_003504_030 Hb_000327_270--Hb_000708_030 Hb_002732_040 Hb_002732_040 Hb_000327_270--Hb_002732_040 Hb_000890_060 Hb_000890_060 Hb_000327_270--Hb_000890_060 Hb_006831_140 Hb_006831_140 Hb_000708_030--Hb_006831_140 Hb_000699_030 Hb_000699_030 Hb_000708_030--Hb_000699_030 Hb_000708_030--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_000708_030--Hb_093458_040 Hb_007479_040 Hb_007479_040 Hb_000665_100--Hb_007479_040 Hb_003938_120 Hb_003938_120 Hb_000665_100--Hb_003938_120 Hb_000665_100--Hb_002110_190 Hb_000318_250 Hb_000318_250 Hb_000665_100--Hb_000318_250 Hb_000028_480 Hb_000028_480 Hb_000665_100--Hb_000028_480 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_000156_010 Hb_000156_010 Hb_011037_030--Hb_000156_010 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_000976_140 Hb_000976_140 Hb_005730_040--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_005730_040--Hb_002849_130 Hb_005867_070 Hb_005867_070 Hb_005730_040--Hb_005867_070 Hb_000170_090 Hb_000170_090 Hb_005730_040--Hb_000170_090 Hb_001225_040 Hb_001225_040 Hb_005730_040--Hb_001225_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61257 8.6793 6.41218 8.82007 6.27591 10.0053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.24564 7.93419 8.22993 7.07899 9.4681

CAGE analysis