Hb_003883_060

Information

Type transcription factor
Description TF Family: BSD
Location Contig3883: 147639-169575
Sequence    

Annotation

kegg
ID rcu:RCOM_0267720
description TFIIH basal transcription factor complex subunit, putative
nr
ID XP_012078500.1
description PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
swissprot
ID Q3ECP0
description Probable RNA polymerase II transcription factor B subunit 1-1 OS=Arabidopsis thaliana GN=TFB1-1 PE=2 SV=1
trembl
ID A0A067KLF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13184 PE=4 SV=1
Gene Ontology
ID GO:0000439
description probable rna polymerase ii transcription factor b subunit 1-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38937: 146939-147156 , PASA_asmbl_38939: 150834-162159 , PASA_asmbl_38940: 164013-164977 , PASA_asmbl_38941: 168241-169439 , PASA_asmbl_38942: 166002-169439 , PASA_asmbl_38943: 166469-166737 , PASA_asmbl_38944: 165007-169439
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003883_060 0.0 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
2 Hb_001301_150 0.0551033921 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
3 Hb_013726_090 0.0613788095 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
4 Hb_004705_170 0.0674354009 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
5 Hb_000976_140 0.0675584196 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
6 Hb_003581_200 0.0682033315 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
7 Hb_000167_010 0.068488382 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004452_110 0.0687066656 - - PREDICTED: uncharacterized protein LOC105639575 isoform X1 [Jatropha curcas]
9 Hb_004319_080 0.0688398912 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
10 Hb_000329_800 0.0690414758 - - conserved hypothetical protein [Ricinus communis]
11 Hb_028960_020 0.0696533151 - - PREDICTED: uncharacterized protein LOC105646163 isoform X1 [Jatropha curcas]
12 Hb_000138_100 0.0700773472 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
13 Hb_027073_020 0.0701850633 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_000140_290 0.0708952199 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 59 kDa protein isoform X1 [Populus euphratica]
15 Hb_003517_040 0.0717470661 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
16 Hb_007472_070 0.0718418271 - - cir, putative [Ricinus communis]
17 Hb_003878_150 0.071882722 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
18 Hb_004846_220 0.0723118049 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
19 Hb_003430_050 0.0723279551 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
20 Hb_001999_310 0.0731596077 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003883_060 Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000167_010 Hb_000167_010 Hb_003883_060--Hb_000167_010 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020 Hb_000011_060 Hb_000011_060 Hb_013726_090--Hb_000011_060 Hb_002600_150 Hb_002600_150 Hb_013726_090--Hb_002600_150 Hb_013726_090--Hb_000138_100 Hb_001999_310 Hb_001999_310 Hb_013726_090--Hb_001999_310 Hb_012498_010 Hb_012498_010 Hb_013726_090--Hb_012498_010 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_000345_160 Hb_000345_160 Hb_004705_170--Hb_000345_160 Hb_004037_020 Hb_004037_020 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_005730_040 Hb_005730_040 Hb_000976_140--Hb_005730_040 Hb_000313_220 Hb_000313_220 Hb_000976_140--Hb_000313_220 Hb_002849_130 Hb_002849_130 Hb_000976_140--Hb_002849_130 Hb_015807_050 Hb_015807_050 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090 Hb_005650_010 Hb_005650_010 Hb_003581_200--Hb_005650_010 Hb_000212_230 Hb_000212_230 Hb_003581_200--Hb_000212_230 Hb_002027_080 Hb_002027_080 Hb_003581_200--Hb_002027_080 Hb_003581_200--Hb_000345_160 Hb_079526_040 Hb_079526_040 Hb_003581_200--Hb_079526_040 Hb_001518_080 Hb_001518_080 Hb_003581_200--Hb_001518_080 Hb_003058_120 Hb_003058_120 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_000167_010--Hb_001301_150 Hb_023001_040 Hb_023001_040 Hb_000167_010--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22458 5.22377 7.16722 7.67724 3.91619 6.17348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47568 5.59745 4.51538 8.54009 8.03477

CAGE analysis