Hb_002027_080

Information

Type transcription factor
Description TF Family: mTERF
Location Contig2027: 37596-39167
Sequence    

Annotation

kegg
ID rcu:RCOM_0647750
description hypothetical protein
nr
ID XP_012092310.1
description PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
swissprot
ID Q6P6Q6
description Transcription termination factor 3, mitochondrial OS=Rattus norvegicus GN=Mterf3 PE=2 SV=1
trembl
ID A0A067JCI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21988 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial transcription termination factor family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20673: 36697-36806 , PASA_asmbl_20674: 37905-38537 , PASA_asmbl_20675: 38566-39019 , PASA_asmbl_20676: 39041-41071 , PASA_asmbl_20677: 39125-41071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_080 0.0 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
2 Hb_002897_090 0.0509366312 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001518_080 0.059077813 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
4 Hb_003581_200 0.0604575438 - - PREDICTED: uncharacterized protein LOC105640179 [Jatropha curcas]
5 Hb_000441_090 0.061709268 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
6 Hb_000773_040 0.0625340464 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
7 Hb_000635_090 0.0626018091 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
8 Hb_000359_210 0.0630311484 - - conserved hypothetical protein [Ricinus communis]
9 Hb_073171_070 0.0658704552 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
10 Hb_008511_020 0.0666061494 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
11 Hb_004679_030 0.0670007988 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
12 Hb_004003_040 0.068492997 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_011228_010 0.0687243158 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001348_080 0.0691679149 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
15 Hb_005650_010 0.0693994419 - - ATP binding protein, putative [Ricinus communis]
16 Hb_012330_010 0.072248962 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
17 Hb_002883_030 0.0735510925 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
18 Hb_000212_230 0.0739446553 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
19 Hb_006501_090 0.0742691634 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
20 Hb_003040_050 0.0749231863 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_080 Hb_002027_080 Hb_002897_090 Hb_002897_090 Hb_002027_080--Hb_002897_090 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_000441_090 Hb_000441_090 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_002883_030 Hb_002883_030 Hb_002897_090--Hb_002883_030 Hb_000359_210 Hb_000359_210 Hb_002897_090--Hb_000359_210 Hb_004679_030 Hb_004679_030 Hb_002897_090--Hb_004679_030 Hb_002897_090--Hb_000441_090 Hb_122968_010 Hb_122968_010 Hb_002897_090--Hb_122968_010 Hb_001518_080--Hb_000635_090 Hb_000214_050 Hb_000214_050 Hb_001518_080--Hb_000214_050 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002811_270 Hb_002811_270 Hb_001518_080--Hb_002811_270 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_005650_010 Hb_005650_010 Hb_003581_200--Hb_005650_010 Hb_000212_230 Hb_000212_230 Hb_003581_200--Hb_000212_230 Hb_000345_160 Hb_000345_160 Hb_003581_200--Hb_000345_160 Hb_003581_200--Hb_079526_040 Hb_003581_200--Hb_001518_080 Hb_000258_070 Hb_000258_070 Hb_000441_090--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_073171_070 Hb_073171_070 Hb_000773_040--Hb_073171_070 Hb_000270_190 Hb_000270_190 Hb_000773_040--Hb_000270_190 Hb_000773_040--Hb_000317_100 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_000773_040--Hb_003040_050 Hb_000103_340 Hb_000103_340 Hb_000635_090--Hb_000103_340 Hb_006913_020 Hb_006913_020 Hb_000635_090--Hb_006913_020 Hb_000635_090--Hb_000270_190 Hb_000635_090--Hb_000773_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89894 5.82075 8.25744 8.98699 6.0378 7.23224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.49824 4.49356 6.17861 7.10511 12.542

CAGE analysis