Hb_002811_270

Information

Type -
Description -
Location Contig2811: 205027-219320
Sequence    

Annotation

kegg
ID rcu:RCOM_1427660
description peptide n-glycanase, putative
nr
ID XP_012089247.1
description PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
swissprot
ID Q9FGY9
description Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Arabidopsis thaliana GN=PNG1 PE=2 SV=1
trembl
ID A0A067JLF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23486 PE=4 SV=1
Gene Ontology
ID GO:0005634
description peptide-n -(n-acetyl-beta-glucosaminyl)asparagine amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29428: 205062-217421 , PASA_asmbl_29432: 217446-218945 , PASA_asmbl_29433: 220241-223544
cDNA
(Sanger)
(ID:Location)		 027_K22.ab1: 220298-221797

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_270 0.0 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
2 Hb_000214_050 0.0502714184 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
3 Hb_002326_040 0.053949241 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
4 Hb_001518_080 0.0593555899 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
5 Hb_012506_030 0.0635781219 - - AP-2 complex subunit alpha, putative [Ricinus communis]
6 Hb_000373_080 0.0655943769 - - PREDICTED: serine decarboxylase [Jatropha curcas]
7 Hb_003186_020 0.0665355722 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
8 Hb_000362_170 0.0686978707 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
9 Hb_170416_010 0.0688230273 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
10 Hb_000665_120 0.0708871046 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105637593 [Jatropha curcas]
11 Hb_007765_100 0.0713199617 - - PREDICTED: helicase SKI2W [Jatropha curcas]
12 Hb_000238_040 0.0721249706 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
13 Hb_001579_330 0.0723053723 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
14 Hb_000085_170 0.075118276 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
15 Hb_015807_050 0.0752534103 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
16 Hb_132840_110 0.0753258444 rubber biosynthesis Gene Name: Pyruvate dehydrogenase pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_000441_220 0.0754207619 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_000510_360 0.0757053328 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
19 Hb_000254_100 0.0757629103 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
20 Hb_000136_110 0.0769306364 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_002811_270 Hb_002811_270 Hb_000214_050 Hb_000214_050 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_001518_080 Hb_001518_080 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_000373_080 Hb_000373_080 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020 Hb_000214_050--Hb_002326_040 Hb_000214_050--Hb_003186_020 Hb_000214_050--Hb_000373_080 Hb_000214_050--Hb_001518_080 Hb_001377_310 Hb_001377_310 Hb_000214_050--Hb_001377_310 Hb_002326_040--Hb_012506_030 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040 Hb_000635_090 Hb_000635_090 Hb_001518_080--Hb_000635_090 Hb_079526_040 Hb_079526_040 Hb_001518_080--Hb_079526_040 Hb_002027_080 Hb_002027_080 Hb_001518_080--Hb_002027_080 Hb_015807_050 Hb_015807_050 Hb_001518_080--Hb_015807_050 Hb_000441_220 Hb_000441_220 Hb_012506_030--Hb_000441_220 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_000373_080--Hb_001377_310 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_000457_230 Hb_000457_230 Hb_003186_020--Hb_000457_230 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6534 12.5772 19.9939 16.5196 13.9063 11.8179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6001 7.02207 11.084 12.907 17.1503

CAGE analysis