Hb_002897_090

Information

Type -
Description -
Location Contig2897: 101345-103916
Sequence    

Annotation

kegg
ID rcu:RCOM_0690200
description hypothetical protein
nr
ID XP_002520891.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q1JPN0
description Rhodanese-like domain-containing protein 7 OS=Arabidopsis thaliana GN=STR7 PE=2 SV=1
trembl
ID B9S4H2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690200 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30326: 101215-103844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002027_080 0.0509366312 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
3 Hb_002883_030 0.0592105994 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
4 Hb_000359_210 0.0606076846 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004679_030 0.0676749788 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
6 Hb_000441_090 0.0693850689 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
7 Hb_122968_010 0.0711737409 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
8 Hb_000773_040 0.0738278538 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
9 Hb_008511_020 0.0746713869 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
10 Hb_041290_020 0.0765889118 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
11 Hb_009569_040 0.0776237552 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
12 Hb_004003_040 0.0792621123 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_001789_110 0.0793103904 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000809_230 0.0793230883 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
15 Hb_109000_020 0.0810011304 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
16 Hb_003544_160 0.082002122 - - -
17 Hb_001518_080 0.0830198593 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
18 Hb_011228_010 0.0832504477 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_003878_150 0.0838959033 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
20 Hb_001662_100 0.0844613301 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002897_090 Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_002897_090--Hb_002027_080 Hb_002883_030 Hb_002883_030 Hb_002897_090--Hb_002883_030 Hb_000359_210 Hb_000359_210 Hb_002897_090--Hb_000359_210 Hb_004679_030 Hb_004679_030 Hb_002897_090--Hb_004679_030 Hb_000441_090 Hb_000441_090 Hb_002897_090--Hb_000441_090 Hb_122968_010 Hb_122968_010 Hb_002897_090--Hb_122968_010 Hb_001518_080 Hb_001518_080 Hb_002027_080--Hb_001518_080 Hb_003581_200 Hb_003581_200 Hb_002027_080--Hb_003581_200 Hb_002027_080--Hb_000441_090 Hb_000773_040 Hb_000773_040 Hb_002027_080--Hb_000773_040 Hb_000635_090 Hb_000635_090 Hb_002027_080--Hb_000635_090 Hb_000345_160 Hb_000345_160 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_000049_020 Hb_000049_020 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020 Hb_000359_210--Hb_002027_080 Hb_001195_400 Hb_001195_400 Hb_000359_210--Hb_001195_400 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_000359_210--Hb_004679_030 Hb_003206_110 Hb_003206_110 Hb_000359_210--Hb_003206_110 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_000258_070 Hb_000258_070 Hb_000441_090--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000441_090--Hb_003517_040 Hb_000317_100 Hb_000317_100 Hb_000441_090--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_000441_090--Hb_005215_010 Hb_003040_050 Hb_003040_050 Hb_000441_090--Hb_003040_050 Hb_000656_070 Hb_000656_070 Hb_122968_010--Hb_000656_070 Hb_001789_110 Hb_001789_110 Hb_122968_010--Hb_001789_110 Hb_027073_020 Hb_027073_020 Hb_122968_010--Hb_027073_020 Hb_003117_030 Hb_003117_030 Hb_122968_010--Hb_003117_030 Hb_000406_200 Hb_000406_200 Hb_122968_010--Hb_000406_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.43356 6.67256 8.91451 12.2989 7.10858 11.0068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04626 6.92849 6.69213 9.07708 15.6948

CAGE analysis