Hb_000809_230

Information

Type -
Description -
Location Contig809: 182628-202229
Sequence    

Annotation

kegg
ID rcu:RCOM_0601590
description nucleotide binding protein, putative
nr
ID XP_012079200.1
description PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K717
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12363 PE=4 SV=1
Gene Ontology
ID GO:0030126
description nucleotide binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59169: 182954-202111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_230 0.0 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
2 Hb_004679_030 0.0417933499 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
3 Hb_001377_350 0.0473420006 - - PREDICTED: exportin-2 [Jatropha curcas]
4 Hb_003544_050 0.049870718 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
5 Hb_002749_060 0.0634198556 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
6 Hb_007994_010 0.0659594158 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
7 Hb_009296_040 0.0718929561 - - hypothetical protein L484_007435 [Morus notabilis]
8 Hb_000358_050 0.073406687 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
9 Hb_000140_210 0.0747806766 - - sec10, putative [Ricinus communis]
10 Hb_135572_010 0.0768088672 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
11 Hb_002890_130 0.076838457 - - tip120, putative [Ricinus communis]
12 Hb_004143_160 0.0770048222 - - SAB, putative [Ricinus communis]
13 Hb_003544_160 0.0782390019 - - -
14 Hb_002897_090 0.0793230883 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000537_050 0.0797401508 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
16 Hb_000922_030 0.0798519028 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
17 Hb_002874_110 0.0805920893 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
18 Hb_000359_210 0.0831824297 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003280_020 0.0834785622 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
20 Hb_008511_020 0.0838494078 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000809_230 Hb_000809_230 Hb_004679_030 Hb_004679_030 Hb_000809_230--Hb_004679_030 Hb_001377_350 Hb_001377_350 Hb_000809_230--Hb_001377_350 Hb_003544_050 Hb_003544_050 Hb_000809_230--Hb_003544_050 Hb_002749_060 Hb_002749_060 Hb_000809_230--Hb_002749_060 Hb_007994_010 Hb_007994_010 Hb_000809_230--Hb_007994_010 Hb_009296_040 Hb_009296_040 Hb_000809_230--Hb_009296_040 Hb_003544_160 Hb_003544_160 Hb_004679_030--Hb_003544_160 Hb_004679_030--Hb_009296_040 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_000140_210 Hb_000140_210 Hb_003544_050--Hb_000140_210 Hb_003544_050--Hb_009296_040 Hb_003544_050--Hb_002749_060 Hb_003544_050--Hb_004679_030 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_135572_010 Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_004143_160 Hb_004143_160 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_009296_040--Hb_000140_210 Hb_011016_050 Hb_011016_050 Hb_009296_040--Hb_011016_050 Hb_010142_020 Hb_010142_020 Hb_009296_040--Hb_010142_020 Hb_000028_390 Hb_000028_390 Hb_009296_040--Hb_000028_390 Hb_000537_050 Hb_000537_050 Hb_009296_040--Hb_000537_050 Hb_000614_240 Hb_000614_240 Hb_009296_040--Hb_000614_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2682 15.8992 12.6335 22.3914 10.7256 20.8699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.82746 8.94365 16.2446 21.2399 26.6646

CAGE analysis