Hb_001188_020

Information

Type -
Description -
Location Contig1188: 23699-42425
Sequence    

Annotation

kegg
ID rcu:RCOM_1400310
description sumo ligase, putative
nr
ID XP_012064859.1
description PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
swissprot
ID Q680Q4
description E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 PE=1 SV=2
trembl
ID A0A067L6K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05563 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-binding protein with miz sp-ring zinc finge isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05554: 23774-42261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001188_020 0.0 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X1 [Jatropha curcas]
2 Hb_002639_080 0.0479061481 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
3 Hb_005656_040 0.0598506734 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_071130_010 0.0636342218 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
5 Hb_043362_010 0.0651560082 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
6 Hb_007994_010 0.0686077572 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
7 Hb_000537_050 0.0704620493 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
8 Hb_002960_080 0.070847499 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
9 Hb_012092_060 0.0741613016 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
10 Hb_000412_010 0.0746481863 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_085781_020 0.0752479165 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
12 Hb_159558_010 0.075704395 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
13 Hb_041327_010 0.0761724983 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
14 Hb_003805_040 0.0764147654 - - Sacsin [Glycine soja]
15 Hb_000003_100 0.0769634873 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
16 Hb_002333_050 0.0771489808 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
17 Hb_009486_170 0.0774551698 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
18 Hb_007818_010 0.0776639715 - - PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Gossypium raimondii]
19 Hb_188063_010 0.077760684 - - hypothetical protein RCOM_1469330 [Ricinus communis]
20 Hb_011202_020 0.0781480024 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001188_020 Hb_001188_020 Hb_002639_080 Hb_002639_080 Hb_001188_020--Hb_002639_080 Hb_005656_040 Hb_005656_040 Hb_001188_020--Hb_005656_040 Hb_071130_010 Hb_071130_010 Hb_001188_020--Hb_071130_010 Hb_043362_010 Hb_043362_010 Hb_001188_020--Hb_043362_010 Hb_007994_010 Hb_007994_010 Hb_001188_020--Hb_007994_010 Hb_000537_050 Hb_000537_050 Hb_001188_020--Hb_000537_050 Hb_041327_010 Hb_041327_010 Hb_002639_080--Hb_041327_010 Hb_002639_080--Hb_071130_010 Hb_004143_160 Hb_004143_160 Hb_002639_080--Hb_004143_160 Hb_000069_120 Hb_000069_120 Hb_002639_080--Hb_000069_120 Hb_007632_010 Hb_007632_010 Hb_002639_080--Hb_007632_010 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_002311_100 Hb_002311_100 Hb_005656_040--Hb_002311_100 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_009767_080 Hb_009767_080 Hb_005656_040--Hb_009767_080 Hb_000206_040 Hb_000206_040 Hb_005656_040--Hb_000206_040 Hb_000230_260 Hb_000230_260 Hb_071130_010--Hb_000230_260 Hb_085781_020 Hb_085781_020 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_000069_120 Hb_071130_010--Hb_041327_010 Hb_002960_080 Hb_002960_080 Hb_043362_010--Hb_002960_080 Hb_002007_110 Hb_002007_110 Hb_043362_010--Hb_002007_110 Hb_003912_070 Hb_003912_070 Hb_043362_010--Hb_003912_070 Hb_003581_170 Hb_003581_170 Hb_043362_010--Hb_003581_170 Hb_003805_040 Hb_003805_040 Hb_043362_010--Hb_003805_040 Hb_135572_010 Hb_135572_010 Hb_007994_010--Hb_135572_010 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_020378_030 Hb_020378_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.60125 16.1571 5.97168 10.9459 9.43524 14.2233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.48563 5.49787 8.61114 14.2496 14.6456

CAGE analysis