Hb_000206_040

Information

Type -
Description -
Location Contig206: 76209-82676
Sequence    

Annotation

kegg
ID rcu:RCOM_0601570
description hypothetical protein
nr
ID XP_012079205.1
description PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
swissprot
ID Q08DV9
description Transmembrane protein 131-like OS=Bos taurus PE=2 SV=2
trembl
ID A0A067KJ93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12365 PE=4 SV=1
Gene Ontology
ID GO:0006807
description o-glycosyl hydrolases family 17 isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21220: 76746-77532 , PASA_asmbl_21221: 77629-78775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000206_040 0.0 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
2 Hb_008494_010 0.0718049166 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
3 Hb_005656_040 0.0747764717 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_001913_060 0.0781953472 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
5 Hb_001821_090 0.0820257104 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
6 Hb_002784_110 0.0840062952 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
7 Hb_002311_100 0.0845903808 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
8 Hb_000069_410 0.0856195156 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
9 Hb_000061_510 0.0960113042 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
10 Hb_005701_070 0.0970862381 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
11 Hb_188063_010 0.0997532231 - - hypothetical protein RCOM_1469330 [Ricinus communis]
12 Hb_000540_060 0.1002699542 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
13 Hb_000083_270 0.101869837 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
14 Hb_011173_030 0.1021578106 - - pumilio, putative [Ricinus communis]
15 Hb_002333_050 0.1028534557 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
16 Hb_000446_120 0.1034526086 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
17 Hb_000406_020 0.103700687 - - -
18 Hb_003211_040 0.1046874249 - - PREDICTED: uncharacterized protein LOC105634664 isoform X1 [Jatropha curcas]
19 Hb_000094_310 0.1047358632 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
20 Hb_001575_010 0.1048313031 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000206_040 Hb_000206_040 Hb_008494_010 Hb_008494_010 Hb_000206_040--Hb_008494_010 Hb_005656_040 Hb_005656_040 Hb_000206_040--Hb_005656_040 Hb_001913_060 Hb_001913_060 Hb_000206_040--Hb_001913_060 Hb_001821_090 Hb_001821_090 Hb_000206_040--Hb_001821_090 Hb_002784_110 Hb_002784_110 Hb_000206_040--Hb_002784_110 Hb_002311_100 Hb_002311_100 Hb_000206_040--Hb_002311_100 Hb_008494_010--Hb_005656_040 Hb_008494_010--Hb_002311_100 Hb_000069_410 Hb_000069_410 Hb_008494_010--Hb_000069_410 Hb_000540_060 Hb_000540_060 Hb_008494_010--Hb_000540_060 Hb_008494_010--Hb_001913_060 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_000412_010 Hb_000412_010 Hb_005656_040--Hb_000412_010 Hb_005656_040--Hb_002311_100 Hb_001628_070 Hb_001628_070 Hb_005656_040--Hb_001628_070 Hb_009767_080 Hb_009767_080 Hb_005656_040--Hb_009767_080 Hb_001913_060--Hb_002784_110 Hb_001913_060--Hb_001821_090 Hb_002400_240 Hb_002400_240 Hb_001913_060--Hb_002400_240 Hb_002107_070 Hb_002107_070 Hb_001913_060--Hb_002107_070 Hb_000446_120 Hb_000446_120 Hb_001913_060--Hb_000446_120 Hb_002329_040 Hb_002329_040 Hb_001913_060--Hb_002329_040 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_002784_110--Hb_000446_120 Hb_025194_040 Hb_025194_040 Hb_002784_110--Hb_025194_040 Hb_000788_070 Hb_000788_070 Hb_002784_110--Hb_000788_070 Hb_000035_290 Hb_000035_290 Hb_002784_110--Hb_000035_290 Hb_000183_020 Hb_000183_020 Hb_002784_110--Hb_000183_020 Hb_000556_220 Hb_000556_220 Hb_002311_100--Hb_000556_220 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_009898_010 Hb_009898_010 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.70985 11.9177 1.94766 5.32731 6.78179 7.79699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24467 2.05961 5.88077 9.79476 7.98462

CAGE analysis