Hb_001821_090

Information

Type transcription factor
Description TF Family: CAMTA
Location Contig1821: 97073-115425
Sequence    

Annotation

kegg
ID rcu:RCOM_1296350
description calmodulin-binding transcription activator (camta), plants, putative
nr
ID XP_012084590.1
description PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
swissprot
ID Q6NPP4
description Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1
trembl
ID A0A067JX34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20177 PE=4 SV=1
Gene Ontology
ID GO:0003676
description calmodulin-binding transcription activator 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17728: 97689-101849 , PASA_asmbl_17729: 100305-100463 , PASA_asmbl_17730: 103409-103523 , PASA_asmbl_17731: 105424-117544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_090 0.0 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
2 Hb_000069_410 0.0432589983 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
3 Hb_009615_170 0.05311677 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
4 Hb_002107_070 0.0558954333 - - hypothetical protein RCOM_1598630 [Ricinus communis]
5 Hb_028487_010 0.0576164613 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
6 Hb_003058_060 0.0587041601 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
7 Hb_000579_230 0.0620095356 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
8 Hb_007426_130 0.0644698801 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_001913_060 0.0656883328 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
10 Hb_001575_010 0.0676362599 - - PREDICTED: pumilio homolog 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_002784_110 0.0686838779 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
12 Hb_003177_060 0.0698168789 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
13 Hb_000369_130 0.0699625648 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
14 Hb_000395_070 0.0724746578 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
15 Hb_011173_030 0.0731102654 - - pumilio, putative [Ricinus communis]
16 Hb_005143_030 0.0733845383 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
17 Hb_004884_150 0.0740379778 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
18 Hb_002329_040 0.0741224556 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_000740_100 0.0744362266 - - calpain, putative [Ricinus communis]
20 Hb_005656_040 0.0751877091 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001821_090 Hb_001821_090 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_001575_010 Hb_001575_010 Hb_000069_410--Hb_001575_010 Hb_003581_170 Hb_003581_170 Hb_000069_410--Hb_003581_170 Hb_023226_080 Hb_023226_080 Hb_000069_410--Hb_023226_080 Hb_001699_280 Hb_001699_280 Hb_000069_410--Hb_001699_280 Hb_000105_040 Hb_000105_040 Hb_000069_410--Hb_000105_040 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_002107_070--Hb_028487_010 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_000307_210 Hb_000307_210 Hb_028487_010--Hb_000307_210 Hb_011173_030 Hb_011173_030 Hb_028487_010--Hb_011173_030 Hb_000740_100 Hb_000740_100 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030 Hb_003058_060--Hb_000369_130 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_003058_060--Hb_000579_230 Hb_003058_060--Hb_104061_020 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9172 20.3367 6.63946 9.31209 13.5129 15.954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53641 6.02055 9.27153 17.8716 10.7167

CAGE analysis