Hb_000307_210

Information

Type -
Description -
Location Contig307: 191186-209514
Sequence    

Annotation

kegg
ID tcc:TCM_034294
description Importin beta-2, putative isoform 2
nr
ID XP_007017905.1
description Transportin 1 isoform 1 [Theobroma cacao]
swissprot
ID B9FDR3
description Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2
trembl
ID A0A061FCT0
description Transportin 1 isoform 1 OS=Theobroma cacao GN=TCM_034294 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transportin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32434: 203626-207290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_210 0.0 - - Transportin 1 isoform 1 [Theobroma cacao]
2 Hb_028487_010 0.0504435908 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
3 Hb_002107_070 0.0671482956 - - hypothetical protein RCOM_1598630 [Ricinus communis]
4 Hb_003058_060 0.0737254455 - - PREDICTED: proteasome-associated protein ECM29 homolog [Jatropha curcas]
5 Hb_011173_030 0.0742650134 - - pumilio, putative [Ricinus communis]
6 Hb_010053_030 0.074775992 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
7 Hb_000740_100 0.0759650145 - - calpain, putative [Ricinus communis]
8 Hb_000010_360 0.0761700282 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
9 Hb_104061_020 0.0777844259 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
10 Hb_001821_090 0.0779301974 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
11 Hb_000369_130 0.0785989035 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
12 Hb_005143_030 0.0787397066 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
13 Hb_148909_030 0.0818203683 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
14 Hb_004884_150 0.0822490984 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
15 Hb_000088_130 0.0834588273 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
16 Hb_001621_130 0.083594363 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
17 Hb_006478_060 0.0845275618 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
18 Hb_002329_040 0.0865035651 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_174821_010 0.0879798671 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
20 Hb_004627_060 0.0888782888 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000307_210 Hb_000307_210 Hb_028487_010 Hb_028487_010 Hb_000307_210--Hb_028487_010 Hb_002107_070 Hb_002107_070 Hb_000307_210--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000307_210--Hb_003058_060 Hb_011173_030 Hb_011173_030 Hb_000307_210--Hb_011173_030 Hb_010053_030 Hb_010053_030 Hb_000307_210--Hb_010053_030 Hb_000740_100 Hb_000740_100 Hb_000307_210--Hb_000740_100 Hb_028487_010--Hb_011173_030 Hb_001821_090 Hb_001821_090 Hb_028487_010--Hb_001821_090 Hb_028487_010--Hb_002107_070 Hb_028487_010--Hb_000740_100 Hb_005143_030 Hb_005143_030 Hb_028487_010--Hb_005143_030 Hb_104061_020 Hb_104061_020 Hb_002107_070--Hb_104061_020 Hb_002329_040 Hb_002329_040 Hb_002107_070--Hb_002329_040 Hb_000369_130 Hb_000369_130 Hb_002107_070--Hb_000369_130 Hb_002107_070--Hb_001821_090 Hb_007635_030 Hb_007635_030 Hb_002107_070--Hb_007635_030 Hb_003058_060--Hb_000369_130 Hb_003058_060--Hb_001821_090 Hb_003058_060--Hb_002107_070 Hb_002170_050 Hb_002170_050 Hb_003058_060--Hb_002170_050 Hb_000579_230 Hb_000579_230 Hb_003058_060--Hb_000579_230 Hb_003058_060--Hb_104061_020 Hb_011173_030--Hb_000740_100 Hb_011173_030--Hb_104061_020 Hb_011173_030--Hb_002107_070 Hb_002784_110 Hb_002784_110 Hb_011173_030--Hb_002784_110 Hb_011173_030--Hb_001821_090 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_010053_030--Hb_000505_020 Hb_010053_030--Hb_104061_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_000740_100--Hb_002329_040 Hb_000261_030 Hb_000261_030 Hb_000740_100--Hb_000261_030 Hb_000395_070 Hb_000395_070 Hb_000740_100--Hb_000395_070 Hb_008024_030 Hb_008024_030 Hb_000740_100--Hb_008024_030 Hb_000740_100--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.22403 9.98972 4.95174 5.02456 10.4383 10.4972
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.17015 3.15599 4.51262 12.6163 5.48396

CAGE analysis