Hb_004096_070

Information

Type -
Description -
Location Contig4096: 91331-98548
Sequence    

Annotation

kegg
ID rcu:RCOM_1725680
description uv excision repair protein rad23, putative
nr
ID XP_012077962.1
description PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
swissprot
ID Q84L31
description Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2
trembl
ID A0A067KKZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12976 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin receptor rad23c-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40419: 91217-98546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_070 0.0 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
2 Hb_010053_030 0.0680216186 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
3 Hb_001454_370 0.0712115274 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
4 Hb_001235_140 0.0736815594 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
5 Hb_012114_080 0.0791414865 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
6 Hb_002157_050 0.0808442041 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
7 Hb_011689_060 0.0852146211 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_000089_120 0.0857158095 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_000505_020 0.0859373512 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
10 Hb_000648_100 0.0863465749 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_000086_560 0.089072152 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
12 Hb_019654_040 0.091243344 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
13 Hb_002078_100 0.0915311968 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
14 Hb_000923_080 0.0917560397 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
15 Hb_003498_120 0.0926531881 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
16 Hb_005333_160 0.0933434734 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
17 Hb_006478_060 0.0949877045 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
18 Hb_011930_080 0.0954409237 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
19 Hb_133702_030 0.096659225 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
20 Hb_028872_070 0.0971033628 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004096_070 Hb_004096_070 Hb_010053_030 Hb_010053_030 Hb_004096_070--Hb_010053_030 Hb_001454_370 Hb_001454_370 Hb_004096_070--Hb_001454_370 Hb_001235_140 Hb_001235_140 Hb_004096_070--Hb_001235_140 Hb_012114_080 Hb_012114_080 Hb_004096_070--Hb_012114_080 Hb_002157_050 Hb_002157_050 Hb_004096_070--Hb_002157_050 Hb_011689_060 Hb_011689_060 Hb_004096_070--Hb_011689_060 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_133702_030 Hb_133702_030 Hb_001454_370--Hb_133702_030 Hb_001454_370--Hb_000505_020 Hb_002078_100 Hb_002078_100 Hb_001454_370--Hb_002078_100 Hb_001454_370--Hb_001235_140 Hb_001935_110 Hb_001935_110 Hb_001454_370--Hb_001935_110 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_001235_140--Hb_000505_020 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_001486_160 Hb_001486_160 Hb_012114_080--Hb_001486_160 Hb_010661_050 Hb_010661_050 Hb_012114_080--Hb_010661_050 Hb_012114_080--Hb_001235_140 Hb_012114_080--Hb_010053_030 Hb_000352_260 Hb_000352_260 Hb_012114_080--Hb_000352_260 Hb_003780_090 Hb_003780_090 Hb_002157_050--Hb_003780_090 Hb_005333_160 Hb_005333_160 Hb_002157_050--Hb_005333_160 Hb_008568_010 Hb_008568_010 Hb_002157_050--Hb_008568_010 Hb_000359_120 Hb_000359_120 Hb_002157_050--Hb_000359_120 Hb_002157_050--Hb_011689_060 Hb_011689_060--Hb_000505_020 Hb_011689_060--Hb_001235_140 Hb_011689_060--Hb_002078_100 Hb_171900_070 Hb_171900_070 Hb_011689_060--Hb_171900_070 Hb_011689_060--Hb_005333_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9401 39.5996 36.8254 27.9647 38.3653 48.9752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7056 13.3704 15.7757 55.9247 17.5017

CAGE analysis