Hb_003780_090

Information

Type -
Description -
Location Contig3780: 95341-102378
Sequence    

Annotation

kegg
ID rcu:RCOM_1518720
description DNA binding protein, putative
nr
ID XP_012066251.1
description PREDICTED: transcription factor bHLH128 [Jatropha curcas]
swissprot
ID Q8H102
description Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1
trembl
ID A0A067L340
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23818 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh128

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38490: 96783-97047 , PASA_asmbl_38492: 98864-102277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003780_090 0.0 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
2 Hb_002157_050 0.0764956583 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
3 Hb_002890_100 0.1021835823 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
4 Hb_118840_050 0.1039914443 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
5 Hb_029695_020 0.1040695531 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
6 Hb_001047_200 0.1049968817 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
7 Hb_000010_360 0.105006328 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
8 Hb_006658_040 0.1054147893 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
9 Hb_005333_160 0.106362453 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
10 Hb_001301_170 0.1065824889 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
11 Hb_000640_310 0.1073594004 - - hypothetical protein JCGZ_14055 [Jatropha curcas]
12 Hb_005539_190 0.1090354857 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
13 Hb_010053_030 0.1098530588 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
14 Hb_000664_070 0.1098620349 - - PREDICTED: protein cereblon [Jatropha curcas]
15 Hb_000191_130 0.1114489494 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
16 Hb_002374_320 0.1116471809 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
17 Hb_023344_010 0.1117445218 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
18 Hb_140049_030 0.1135675171 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
19 Hb_008568_010 0.1136576432 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
20 Hb_000406_230 0.1137528991 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003780_090 Hb_003780_090 Hb_002157_050 Hb_002157_050 Hb_003780_090--Hb_002157_050 Hb_002890_100 Hb_002890_100 Hb_003780_090--Hb_002890_100 Hb_118840_050 Hb_118840_050 Hb_003780_090--Hb_118840_050 Hb_029695_020 Hb_029695_020 Hb_003780_090--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_003780_090--Hb_001047_200 Hb_000010_360 Hb_000010_360 Hb_003780_090--Hb_000010_360 Hb_004096_070 Hb_004096_070 Hb_002157_050--Hb_004096_070 Hb_005333_160 Hb_005333_160 Hb_002157_050--Hb_005333_160 Hb_008568_010 Hb_008568_010 Hb_002157_050--Hb_008568_010 Hb_000359_120 Hb_000359_120 Hb_002157_050--Hb_000359_120 Hb_011689_060 Hb_011689_060 Hb_002157_050--Hb_011689_060 Hb_002890_100--Hb_118840_050 Hb_002666_080 Hb_002666_080 Hb_002890_100--Hb_002666_080 Hb_000184_150 Hb_000184_150 Hb_002890_100--Hb_000184_150 Hb_002890_100--Hb_029695_020 Hb_002890_100--Hb_001047_200 Hb_000917_160 Hb_000917_160 Hb_002890_100--Hb_000917_160 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_118840_050--Hb_001047_200 Hb_000926_010 Hb_000926_010 Hb_029695_020--Hb_000926_010 Hb_005542_050 Hb_005542_050 Hb_029695_020--Hb_005542_050 Hb_029695_020--Hb_001047_200 Hb_000823_030 Hb_000823_030 Hb_029695_020--Hb_000823_030 Hb_012114_050 Hb_012114_050 Hb_029695_020--Hb_012114_050 Hb_000556_170 Hb_000556_170 Hb_029695_020--Hb_000556_170 Hb_001047_200--Hb_000577_030 Hb_001047_200--Hb_000823_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_001047_200--Hb_005542_050 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000640_310 Hb_000640_310 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3325 20.6634 13.9091 5.72391 19.9491 13.3475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.46223 5.79541 4.05084 19.4827 4.77257

CAGE analysis