Hb_002890_100

Information

Type -
Description -
Location Contig2890: 140218-155580
Sequence    

Annotation

kegg
ID rcu:RCOM_0496470
description Spindle assembly checkpoint component mad1, putative
nr
ID XP_012066758.1
description PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
swissprot
ID Q9LTY1
description Mitotic spindle checkpoint protein MAD1 OS=Arabidopsis thaliana GN=MAD1 PE=1 SV=1
trembl
ID A0A067L203
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00308 PE=4 SV=1
Gene Ontology
ID GO:0005635
description mitotic spindle checkpoint protein mad1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30195: 141082-153002 , PASA_asmbl_30196: 152450-153002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_100 0.0 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
2 Hb_118840_050 0.0808468925 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
3 Hb_002666_080 0.0821632962 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000184_150 0.0866863071 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
5 Hb_029695_020 0.0924343656 - - PREDICTED: inactive beta-amylase 4, chloroplastic [Jatropha curcas]
6 Hb_001047_200 0.096429454 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
7 Hb_000917_160 0.0994167718 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
8 Hb_002374_320 0.1011533707 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
9 Hb_003780_090 0.1021835823 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
10 Hb_033554_020 0.1031080723 transcription factor TF Family: BES1 PREDICTED: beta-amylase 8 [Jatropha curcas]
11 Hb_056987_010 0.1031193892 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
12 Hb_000823_030 0.1035985554 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Jatropha curcas]
13 Hb_001832_130 0.1040978522 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
14 Hb_001135_120 0.1041608943 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
15 Hb_000191_130 0.1047798296 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
16 Hb_000302_170 0.1052646929 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
17 Hb_002284_170 0.1053454405 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
18 Hb_000577_030 0.1064326197 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
19 Hb_001301_170 0.1066814583 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
20 Hb_002081_120 0.1070037281 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_100 Hb_002890_100 Hb_118840_050 Hb_118840_050 Hb_002890_100--Hb_118840_050 Hb_002666_080 Hb_002666_080 Hb_002890_100--Hb_002666_080 Hb_000184_150 Hb_000184_150 Hb_002890_100--Hb_000184_150 Hb_029695_020 Hb_029695_020 Hb_002890_100--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_002890_100--Hb_001047_200 Hb_000917_160 Hb_000917_160 Hb_002890_100--Hb_000917_160 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_118840_050--Hb_001047_200 Hb_002081_120 Hb_002081_120 Hb_002666_080--Hb_002081_120 Hb_000264_080 Hb_000264_080 Hb_002666_080--Hb_000264_080 Hb_056987_010 Hb_056987_010 Hb_002666_080--Hb_056987_010 Hb_002666_080--Hb_118840_050 Hb_000336_110 Hb_000336_110 Hb_002666_080--Hb_000336_110 Hb_000184_150--Hb_001047_200 Hb_000184_150--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_000184_150--Hb_000823_030 Hb_001723_140 Hb_001723_140 Hb_000184_150--Hb_001723_140 Hb_000184_150--Hb_000917_160 Hb_006618_090 Hb_006618_090 Hb_000184_150--Hb_006618_090 Hb_000926_010 Hb_000926_010 Hb_029695_020--Hb_000926_010 Hb_005542_050 Hb_005542_050 Hb_029695_020--Hb_005542_050 Hb_029695_020--Hb_001047_200 Hb_029695_020--Hb_000823_030 Hb_012114_050 Hb_012114_050 Hb_029695_020--Hb_012114_050 Hb_000556_170 Hb_000556_170 Hb_029695_020--Hb_000556_170 Hb_001047_200--Hb_000577_030 Hb_001047_200--Hb_000823_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_001047_200--Hb_005542_050 Hb_000917_160--Hb_000062_470 Hb_000917_160--Hb_000191_130 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7463 17.4976 13.2268 11.4453 17.3206 10.7263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.76368 3.97946 4.26577 14.9756 4.96454

CAGE analysis