Hb_056987_010

Information

Type -
Description -
Location Contig56987: 36-848
Sequence    

Annotation

kegg
ID rcu:RCOM_1338760
description DNA-damage repair protein drt111, putative
nr
ID KHN20503.1
description DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
swissprot
ID P42698
description DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=1 SV=2
trembl
ID A0A0B2QKT1
description DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Glycine soja GN=glysoja_029516 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-damage-repair toleration protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056987_010 0.0 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
2 Hb_000958_150 0.0631529888 - - Actin, putative [Ricinus communis]
3 Hb_000264_080 0.0785836722 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
4 Hb_002284_170 0.081226653 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
5 Hb_000139_320 0.083802769 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
6 Hb_073171_090 0.0867833828 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
7 Hb_000302_170 0.0889741816 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
8 Hb_001489_100 0.0903421005 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
9 Hb_001135_120 0.0907514161 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
10 Hb_002081_120 0.0913250814 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
11 Hb_005322_050 0.092294344 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
12 Hb_002325_040 0.0930070204 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
13 Hb_102438_030 0.0931354875 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
14 Hb_003640_020 0.0938079645 - - pelota, putative [Ricinus communis]
15 Hb_000069_130 0.0938748635 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
16 Hb_002666_080 0.0946537118 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001033_050 0.0953664114 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
18 Hb_000205_130 0.095967926 - - calcium ion binding protein, putative [Ricinus communis]
19 Hb_030545_030 0.0961833609 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
20 Hb_184798_080 0.0967090565 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]

Gene co-expression network

sample Hb_056987_010 Hb_056987_010 Hb_000958_150 Hb_000958_150 Hb_056987_010--Hb_000958_150 Hb_000264_080 Hb_000264_080 Hb_056987_010--Hb_000264_080 Hb_002284_170 Hb_002284_170 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_073171_090 Hb_073171_090 Hb_056987_010--Hb_073171_090 Hb_000302_170 Hb_000302_170 Hb_056987_010--Hb_000302_170 Hb_000958_150--Hb_002284_170 Hb_102438_030 Hb_102438_030 Hb_000958_150--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_000958_150--Hb_030545_030 Hb_002092_070 Hb_002092_070 Hb_000958_150--Hb_002092_070 Hb_096819_010 Hb_096819_010 Hb_000958_150--Hb_096819_010 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000061_490 Hb_000061_490 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_004410_070 Hb_004410_070 Hb_000264_080--Hb_004410_070 Hb_000336_110 Hb_000336_110 Hb_000264_080--Hb_000336_110 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_000340_030 Hb_000340_030 Hb_000139_320--Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000139_320--Hb_001723_010 Hb_003711_010 Hb_003711_010 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000059_200 Hb_000059_200 Hb_073171_090--Hb_000059_200 Hb_005322_050 Hb_005322_050 Hb_073171_090--Hb_005322_050 Hb_007163_060 Hb_007163_060 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_073171_090--Hb_000302_170 Hb_000302_170--Hb_005322_050 Hb_000302_170--Hb_000300_550 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6928 33.3939 23.2747 24.2399 18.5212 20.2025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.51792 9.44533 5.84626 18.1198 7.53455

CAGE analysis