Hb_000059_200

Information

Type -
Description -
Location Contig59: 203462-206362
Sequence    

Annotation

kegg
ID rcu:RCOM_0215070
description hypothetical protein
nr
ID XP_012089706.1
description PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
swissprot
ID F4ISY0
description WEB family protein At2g38370 OS=Arabidopsis thaliana GN=At2g38370 PE=2 SV=1
trembl
ID A0A067JFW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00373 PE=4 SV=1
Gene Ontology
ID GO:0006629
description web family protein at2g38370-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50169: 203627-206395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_200 0.0 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
2 Hb_073171_090 0.0736540998 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
3 Hb_002081_120 0.0907434914 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
4 Hb_096819_010 0.0917188502 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
5 Hb_000958_150 0.0965990404 - - Actin, putative [Ricinus communis]
6 Hb_003470_030 0.0984750676 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
7 Hb_000205_130 0.1000340399 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_056987_010 0.1015892822 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
9 Hb_001489_100 0.1038650158 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
10 Hb_005656_080 0.1061523975 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
11 Hb_005322_050 0.1101868758 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
12 Hb_000637_140 0.1126302954 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
13 Hb_000300_550 0.1139740893 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_002902_020 0.1144421355 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
15 Hb_002965_040 0.1144627457 - - drought-responsive family protein [Populus trichocarpa]
16 Hb_000197_030 0.115240812 - - hypothetical protein RCOM_1447500 [Ricinus communis]
17 Hb_000230_430 0.1159411752 - - catalytic, putative [Ricinus communis]
18 Hb_000608_260 0.1160870235 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
19 Hb_002666_080 0.1163246259 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000069_590 0.1166155761 - - auxin-responsive GH3 family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000059_200 Hb_000059_200 Hb_073171_090 Hb_073171_090 Hb_000059_200--Hb_073171_090 Hb_002081_120 Hb_002081_120 Hb_000059_200--Hb_002081_120 Hb_096819_010 Hb_096819_010 Hb_000059_200--Hb_096819_010 Hb_000958_150 Hb_000958_150 Hb_000059_200--Hb_000958_150 Hb_003470_030 Hb_003470_030 Hb_000059_200--Hb_003470_030 Hb_000205_130 Hb_000205_130 Hb_000059_200--Hb_000205_130 Hb_005322_050 Hb_005322_050 Hb_073171_090--Hb_005322_050 Hb_056987_010 Hb_056987_010 Hb_073171_090--Hb_056987_010 Hb_007163_060 Hb_007163_060 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_073171_090--Hb_000302_170 Hb_000046_070 Hb_000046_070 Hb_002081_120--Hb_000046_070 Hb_002081_120--Hb_003470_030 Hb_002666_080 Hb_002666_080 Hb_002081_120--Hb_002666_080 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_001033_050 Hb_001033_050 Hb_002081_120--Hb_001033_050 Hb_002477_250 Hb_002477_250 Hb_002081_120--Hb_002477_250 Hb_030545_030 Hb_030545_030 Hb_096819_010--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_096819_010--Hb_002903_140 Hb_008165_030 Hb_008165_030 Hb_096819_010--Hb_008165_030 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020 Hb_002284_170 Hb_002284_170 Hb_000958_150--Hb_002284_170 Hb_000958_150--Hb_056987_010 Hb_102438_030 Hb_102438_030 Hb_000958_150--Hb_102438_030 Hb_000958_150--Hb_030545_030 Hb_002092_070 Hb_002092_070 Hb_000958_150--Hb_002092_070 Hb_003470_030--Hb_002477_250 Hb_000926_010 Hb_000926_010 Hb_003470_030--Hb_000926_010 Hb_000264_070 Hb_000264_070 Hb_003470_030--Hb_000264_070 Hb_003470_030--Hb_002903_140 Hb_003470_030--Hb_096819_010 Hb_008387_010 Hb_008387_010 Hb_000205_130--Hb_008387_010 Hb_003912_040 Hb_003912_040 Hb_000205_130--Hb_003912_040 Hb_008568_020 Hb_008568_020 Hb_000205_130--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_000205_130--Hb_003096_060 Hb_002615_120 Hb_002615_120 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2543 44.9475 35.2696 36.2112 23.2172 31.188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9809 5.82565 10.994 13.6881 11.6989

CAGE analysis