Hb_000205_130

Information

Type -
Description -
Location Contig205: 189668-205871
Sequence    

Annotation

kegg
ID rcu:RCOM_0609450
description calcium ion binding protein, putative
nr
ID XP_002521983.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID Q5QIT3
description Serine/threonine protein phosphatase 2A regulatory subunit B''beta OS=Arabidopsis thaliana GN=B''BETA PE=1 SV=1
trembl
ID B9S7L4
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0609450 PE=4 SV=1
Gene Ontology
ID GO:0005509
description serine threonine protein phosphatase 2a regulatory subunit b beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21109: 189788-205741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_130 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_008387_010 0.0681027137 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
3 Hb_003912_040 0.0717552568 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
4 Hb_008568_020 0.071784273 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
5 Hb_003096_060 0.072614092 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
6 Hb_002615_120 0.0737795442 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
7 Hb_000525_100 0.075873568 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
8 Hb_008226_090 0.0768643061 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
9 Hb_001674_040 0.0772952196 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
10 Hb_002811_040 0.0783992214 - - 5'->3' exoribonuclease, putative [Ricinus communis]
11 Hb_007062_040 0.0804824729 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
12 Hb_000264_070 0.0815230592 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
13 Hb_002477_250 0.0835446754 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
14 Hb_005723_020 0.0851020548 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001405_190 0.0857915846 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
16 Hb_001584_350 0.0859176427 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
17 Hb_000787_150 0.08635025 - - PREDICTED: protein NDR1-like [Jatropha curcas]
18 Hb_000635_040 0.0867385051 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
19 Hb_000958_150 0.0868395578 - - Actin, putative [Ricinus communis]
20 Hb_000236_490 0.0875361807 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000205_130 Hb_000205_130 Hb_008387_010 Hb_008387_010 Hb_000205_130--Hb_008387_010 Hb_003912_040 Hb_003912_040 Hb_000205_130--Hb_003912_040 Hb_008568_020 Hb_008568_020 Hb_000205_130--Hb_008568_020 Hb_003096_060 Hb_003096_060 Hb_000205_130--Hb_003096_060 Hb_002615_120 Hb_002615_120 Hb_000205_130--Hb_002615_120 Hb_000525_100 Hb_000525_100 Hb_000205_130--Hb_000525_100 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_002811_040 Hb_002811_040 Hb_008387_010--Hb_002811_040 Hb_008387_010--Hb_002615_120 Hb_017214_040 Hb_017214_040 Hb_008387_010--Hb_017214_040 Hb_026234_010 Hb_026234_010 Hb_008387_010--Hb_026234_010 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_000046_570 Hb_000046_570 Hb_003912_040--Hb_000046_570 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_007062_040 Hb_007062_040 Hb_003912_040--Hb_007062_040 Hb_008226_090 Hb_008226_090 Hb_003912_040--Hb_008226_090 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_008568_020--Hb_002615_120 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_032202_080 Hb_032202_080 Hb_002615_120--Hb_032202_080 Hb_002615_120--Hb_000457_230 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_000525_100--Hb_002615_120 Hb_000525_100--Hb_003096_060 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2069 21.6267 22.3508 16.7178 11.9767 17.7276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.70696 7.97558 5.87822 9.84012 10.569

CAGE analysis