Hb_009270_040

Information

Type -
Description -
Location Contig9270: 83270-83648
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009270_040 0.0 - - -
2 Hb_000525_100 0.0653634302 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
3 Hb_000138_130 0.0879467463 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
4 Hb_000760_020 0.0947786254 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
5 Hb_000042_340 0.0952709313 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
6 Hb_003994_140 0.0954882758 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000983_120 0.0971409764 - - cyclin-dependent protein kinase, putative [Ricinus communis]
8 Hb_000679_340 0.1044583575 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
9 Hb_002228_110 0.1064388093 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
10 Hb_032202_080 0.1073213175 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
11 Hb_005288_080 0.1086954881 - - conserved hypothetical protein [Ricinus communis]
12 Hb_039605_010 0.110868532 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
13 Hb_002615_120 0.1113048405 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
14 Hb_000563_330 0.1128360514 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_003096_060 0.1130002948 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
16 Hb_000260_680 0.1144017792 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
17 Hb_004128_200 0.1146364202 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
18 Hb_005389_100 0.115085675 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
19 Hb_001776_060 0.1156746468 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
20 Hb_000576_050 0.1160275554 - - Kinase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_009270_040 Hb_009270_040 Hb_000525_100 Hb_000525_100 Hb_009270_040--Hb_000525_100 Hb_000138_130 Hb_000138_130 Hb_009270_040--Hb_000138_130 Hb_000760_020 Hb_000760_020 Hb_009270_040--Hb_000760_020 Hb_000042_340 Hb_000042_340 Hb_009270_040--Hb_000042_340 Hb_003994_140 Hb_003994_140 Hb_009270_040--Hb_003994_140 Hb_000983_120 Hb_000983_120 Hb_009270_040--Hb_000983_120 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_032202_080 Hb_032202_080 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340 Hb_000776_100 Hb_000776_100 Hb_000138_130--Hb_000776_100 Hb_000414_050 Hb_000414_050 Hb_000138_130--Hb_000414_050 Hb_000138_130--Hb_000525_100 Hb_000138_130--Hb_002615_120 Hb_002928_010 Hb_002928_010 Hb_000138_130--Hb_002928_010 Hb_002042_030 Hb_002042_030 Hb_000138_130--Hb_002042_030 Hb_014361_150 Hb_014361_150 Hb_000760_020--Hb_014361_150 Hb_001077_030 Hb_001077_030 Hb_000760_020--Hb_001077_030 Hb_000760_020--Hb_000525_100 Hb_144166_010 Hb_144166_010 Hb_000760_020--Hb_144166_010 Hb_000291_060 Hb_000291_060 Hb_000760_020--Hb_000291_060 Hb_000760_020--Hb_003096_060 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_003994_140--Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_003994_140--Hb_039605_010 Hb_000563_330 Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_003994_140--Hb_000525_100 Hb_003994_140--Hb_000983_120 Hb_003994_140--Hb_002042_030 Hb_000983_120--Hb_039605_010 Hb_000983_120--Hb_002928_010 Hb_000983_120--Hb_000525_100 Hb_027073_030 Hb_027073_030 Hb_000983_120--Hb_027073_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50556 3.12102 4.41838 1.89279 2.6404 3.80799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.97047 2.17409 0.873826 0.866729 1.89539

CAGE analysis