Hb_000042_340

Information

Type -
Description -
Location Contig42: 292053-296435
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41870g
description hypothetical protein
nr
ID XP_012070667.1
description PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
swissprot
ID Q1ECE0
description Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1
trembl
ID A0A067KS42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00709 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 4-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41487: 292127-296083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000042_340 0.0 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
2 Hb_000983_120 0.0728229822 - - cyclin-dependent protein kinase, putative [Ricinus communis]
3 Hb_000599_080 0.0740702799 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
4 Hb_001652_080 0.0775694353 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
5 Hb_010362_030 0.0861829656 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
6 Hb_000525_100 0.0865614031 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
7 Hb_003292_050 0.0889231669 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
8 Hb_032202_230 0.0899769126 - - peroxisomal biogenesis factor, putative [Ricinus communis]
9 Hb_000125_200 0.0918714229 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
10 Hb_039605_010 0.0938150844 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
11 Hb_001163_120 0.0941919876 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_014361_150 0.0951422984 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
13 Hb_009270_040 0.0952709313 - - -
14 Hb_000922_020 0.0963853196 - - protein binding protein, putative [Ricinus communis]
15 Hb_000679_340 0.0995523095 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
16 Hb_000139_190 0.099719564 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
17 Hb_003994_140 0.0997637811 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005288_080 0.0998334018 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000260_440 0.1015349404 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
20 Hb_000760_020 0.1016514992 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000042_340 Hb_000042_340 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000525_100 Hb_000525_100 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_039605_010 Hb_039605_010 Hb_000983_120--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_000983_120--Hb_003994_140 Hb_002928_010 Hb_002928_010 Hb_000983_120--Hb_002928_010 Hb_000983_120--Hb_000525_100 Hb_027073_030 Hb_027073_030 Hb_000983_120--Hb_027073_030 Hb_000563_600 Hb_000563_600 Hb_000599_080--Hb_000563_600 Hb_000922_020 Hb_000922_020 Hb_000599_080--Hb_000922_020 Hb_000031_280 Hb_000031_280 Hb_000599_080--Hb_000031_280 Hb_000599_080--Hb_000525_100 Hb_032202_080 Hb_032202_080 Hb_000599_080--Hb_032202_080 Hb_032202_230 Hb_032202_230 Hb_001652_080--Hb_032202_230 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_003994_200 Hb_003994_200 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000227_250 Hb_000227_250 Hb_001652_080--Hb_000227_250 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_001140_030 Hb_001140_030 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340 Hb_003292_050--Hb_010362_030 Hb_000402_120 Hb_000402_120 Hb_003292_050--Hb_000402_120 Hb_003292_050--Hb_001140_030 Hb_032264_060 Hb_032264_060 Hb_003292_050--Hb_032264_060 Hb_003292_050--Hb_000922_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.3556 90.7706 112.521 50.6344 84.2542 98.7777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.6541 39.3712 45.4516 18.9233 58.2044

CAGE analysis