Hb_000227_250

Information

Type transcription factor
Description TF Family: SNF2
Location Contig227: 216988-227976
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14930g
description POPTRDRAFT_766324; homeotic gene regulator family protein
nr
ID XP_012069573.1
description PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
swissprot
ID F4J9M5
description Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana GN=CHR12 PE=2 SV=1
trembl
ID A0A067KVH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02140 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable atp-dependent dna helicase chr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23624: 220811-221178 , PASA_asmbl_23625: 225926-227070 , PASA_asmbl_23626: 227134-227944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_250 0.0 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
2 Hb_005883_010 0.0807042367 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005188_060 0.0865347182 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_000140_330 0.0888504603 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
5 Hb_001652_080 0.0891191708 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
6 Hb_000181_120 0.093052309 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
7 Hb_007943_120 0.0951187458 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
8 Hb_010738_010 0.0967212563 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_000260_440 0.0982027064 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
10 Hb_116349_030 0.0987578496 - - PREDICTED: zinc finger MYND domain-containing protein 15 isoform X3 [Jatropha curcas]
11 Hb_032264_060 0.099451221 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
12 Hb_001377_320 0.0994754143 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
13 Hb_001486_080 0.1002095402 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
14 Hb_000563_600 0.100757262 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
15 Hb_001953_150 0.1019652685 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
16 Hb_000406_240 0.1026231617 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
17 Hb_027073_030 0.1044525422 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
18 Hb_004055_150 0.1050020396 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004635_050 0.105111613 - - nucleolar phosphoprotein, putative [Ricinus communis]
20 Hb_032202_230 0.1056764634 - - peroxisomal biogenesis factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000227_250 Hb_000227_250 Hb_005883_010 Hb_005883_010 Hb_000227_250--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000227_250--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_000227_250--Hb_000140_330 Hb_001652_080 Hb_001652_080 Hb_000227_250--Hb_001652_080 Hb_000181_120 Hb_000181_120 Hb_000227_250--Hb_000181_120 Hb_007943_120 Hb_007943_120 Hb_000227_250--Hb_007943_120 Hb_005883_010--Hb_007943_120 Hb_005883_010--Hb_005188_060 Hb_000283_130 Hb_000283_130 Hb_005883_010--Hb_000283_130 Hb_010738_010 Hb_010738_010 Hb_005883_010--Hb_010738_010 Hb_005883_010--Hb_000140_330 Hb_007229_040 Hb_007229_040 Hb_005883_010--Hb_007229_040 Hb_005188_060--Hb_007943_120 Hb_003680_230 Hb_003680_230 Hb_005188_060--Hb_003680_230 Hb_005188_060--Hb_000140_330 Hb_005188_060--Hb_007229_040 Hb_004635_050 Hb_004635_050 Hb_005188_060--Hb_004635_050 Hb_000140_330--Hb_007943_120 Hb_000406_240 Hb_000406_240 Hb_000140_330--Hb_000406_240 Hb_006452_160 Hb_006452_160 Hb_000140_330--Hb_006452_160 Hb_000368_020 Hb_000368_020 Hb_000140_330--Hb_000368_020 Hb_032202_230 Hb_032202_230 Hb_001652_080--Hb_032202_230 Hb_000042_340 Hb_000042_340 Hb_001652_080--Hb_000042_340 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_003994_200 Hb_003994_200 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000261_220 Hb_000261_220 Hb_000181_120--Hb_000261_220 Hb_031527_020 Hb_031527_020 Hb_000181_120--Hb_031527_020 Hb_000487_420 Hb_000487_420 Hb_000181_120--Hb_000487_420 Hb_002374_280 Hb_002374_280 Hb_000181_120--Hb_002374_280 Hb_001083_050 Hb_001083_050 Hb_000181_120--Hb_001083_050 Hb_004055_150 Hb_004055_150 Hb_000181_120--Hb_004055_150 Hb_028872_120 Hb_028872_120 Hb_007943_120--Hb_028872_120 Hb_001771_120 Hb_001771_120 Hb_007943_120--Hb_001771_120 Hb_007943_120--Hb_004635_050 Hb_007943_120--Hb_003680_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1832 18.3484 17.8882 6.39359 18.4742 13.4603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1722 7.73483 10.8767 7.50155 9.49489

CAGE analysis