Hb_032202_230

Information

Type -
Description -
Location Contig32202: 122583-125993
Sequence    

Annotation

kegg
ID rcu:RCOM_1613770
description peroxisomal biogenesis factor, putative
nr
ID XP_002511795.1
description peroxisomal biogenesis factor, putative [Ricinus communis]
swissprot
ID Q9LQ73
description Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1
trembl
ID B9RDK6
description Peroxisomal biogenesis factor, putative OS=Ricinus communis GN=RCOM_1613770 PE=4 SV=1
Gene Ontology
ID GO:0005779
description peroxisomal membrane protein 11c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34096: 122436-126000 , PASA_asmbl_34097: 122417-125985 , PASA_asmbl_34098: 123493-123892
cDNA
(Sanger)
(ID:Location)		 003_N13.ab1: 122516-125765 , 015_M17.ab1: 122516-125720 , 052_H23.ab1: 122516-125728

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_230 0.0 - - peroxisomal biogenesis factor, putative [Ricinus communis]
2 Hb_001652_080 0.0519262592 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
3 Hb_000368_020 0.0767792843 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
4 Hb_006452_160 0.0841107788 - - structural constituent of ribosome, putative [Ricinus communis]
5 Hb_000576_050 0.088607034 - - Kinase superfamily protein [Theobroma cacao]
6 Hb_003994_200 0.0889869841 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
7 Hb_000042_340 0.0899769126 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_000948_180 0.0906674414 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
9 Hb_000390_310 0.0909075584 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
10 Hb_004951_070 0.0924188338 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
11 Hb_007904_120 0.0937177806 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
12 Hb_007007_060 0.0951765938 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
13 Hb_000140_330 0.0952091376 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
14 Hb_006824_060 0.0957442602 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
15 Hb_022693_030 0.0975130043 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
16 Hb_000243_200 0.0991121619 - - conserved hypothetical protein [Ricinus communis]
17 Hb_022256_060 0.0999707898 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
18 Hb_001377_320 0.1003807924 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
19 Hb_004079_120 0.1013222217 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
20 Hb_000649_070 0.1013738393 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_032202_230 Hb_032202_230 Hb_001652_080 Hb_001652_080 Hb_032202_230--Hb_001652_080 Hb_000368_020 Hb_000368_020 Hb_032202_230--Hb_000368_020 Hb_006452_160 Hb_006452_160 Hb_032202_230--Hb_006452_160 Hb_000576_050 Hb_000576_050 Hb_032202_230--Hb_000576_050 Hb_003994_200 Hb_003994_200 Hb_032202_230--Hb_003994_200 Hb_000042_340 Hb_000042_340 Hb_032202_230--Hb_000042_340 Hb_001652_080--Hb_000042_340 Hb_007904_120 Hb_007904_120 Hb_001652_080--Hb_007904_120 Hb_001652_080--Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_001652_080--Hb_007007_060 Hb_000227_250 Hb_000227_250 Hb_001652_080--Hb_000227_250 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060 Hb_002739_130 Hb_002739_130 Hb_006452_160--Hb_002739_130 Hb_000563_330 Hb_000563_330 Hb_006452_160--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_006452_160--Hb_002045_150 Hb_005188_060 Hb_005188_060 Hb_006452_160--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_006452_160--Hb_000140_330 Hb_016734_090 Hb_016734_090 Hb_006452_160--Hb_016734_090 Hb_058972_010 Hb_058972_010 Hb_000576_050--Hb_058972_010 Hb_001418_040 Hb_001418_040 Hb_000576_050--Hb_001418_040 Hb_000649_070 Hb_000649_070 Hb_000576_050--Hb_000649_070 Hb_007313_090 Hb_007313_090 Hb_000576_050--Hb_007313_090 Hb_000576_050--Hb_006960_050 Hb_000260_100 Hb_000260_100 Hb_000576_050--Hb_000260_100 Hb_003994_200--Hb_007007_060 Hb_021422_010 Hb_021422_010 Hb_003994_200--Hb_021422_010 Hb_000032_490 Hb_000032_490 Hb_003994_200--Hb_000032_490 Hb_003018_060 Hb_003018_060 Hb_003994_200--Hb_003018_060 Hb_001357_090 Hb_001357_090 Hb_003994_200--Hb_001357_090 Hb_003994_200--Hb_000368_020 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000525_100 Hb_000525_100 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.892 69.4461 104.603 31.5968 96.7326 100.51
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.4983 51.6501 32.1215 25.8312 58.4117

CAGE analysis