Hb_003994_200

Information

Type -
Description -
Location Contig3994: 202977-206433
Sequence    

Annotation

kegg
ID rcu:RCOM_1573710
description hypothetical protein
nr
ID XP_012087317.1
description PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22583 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39759: 203038-206376 , PASA_asmbl_39760: 204711-204977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_200 0.0 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
2 Hb_007007_060 0.0730254856 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
3 Hb_021422_010 0.0789380997 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
4 Hb_000032_490 0.0803383539 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
5 Hb_003018_060 0.0818038888 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
6 Hb_001357_090 0.0823078149 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
7 Hb_000368_020 0.0832675889 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
8 Hb_006960_050 0.0837854201 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
9 Hb_004055_150 0.0863798782 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001652_080 0.0876138777 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
11 Hb_029142_060 0.0880186808 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
12 Hb_032202_230 0.0889869841 - - peroxisomal biogenesis factor, putative [Ricinus communis]
13 Hb_000649_070 0.0906318941 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
14 Hb_000926_310 0.0906937659 - - uncharacterized protein LOC100500241 [Glycine max]
15 Hb_106552_050 0.0911700002 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
16 Hb_008695_020 0.0926562035 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
17 Hb_000453_050 0.0927282093 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
18 Hb_000679_130 0.0927483236 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000260_100 0.0946292897 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009646_030 0.0952036478 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003994_200 Hb_003994_200 Hb_007007_060 Hb_007007_060 Hb_003994_200--Hb_007007_060 Hb_021422_010 Hb_021422_010 Hb_003994_200--Hb_021422_010 Hb_000032_490 Hb_000032_490 Hb_003994_200--Hb_000032_490 Hb_003018_060 Hb_003018_060 Hb_003994_200--Hb_003018_060 Hb_001357_090 Hb_001357_090 Hb_003994_200--Hb_001357_090 Hb_000368_020 Hb_000368_020 Hb_003994_200--Hb_000368_020 Hb_000160_210 Hb_000160_210 Hb_007007_060--Hb_000160_210 Hb_008695_020 Hb_008695_020 Hb_007007_060--Hb_008695_020 Hb_000260_100 Hb_000260_100 Hb_007007_060--Hb_000260_100 Hb_006960_050 Hb_006960_050 Hb_007007_060--Hb_006960_050 Hb_004055_150 Hb_004055_150 Hb_007007_060--Hb_004055_150 Hb_033720_010 Hb_033720_010 Hb_007007_060--Hb_033720_010 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_021422_010--Hb_003018_060 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_021422_010--Hb_006960_050 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_000946_120 Hb_000946_120 Hb_000032_490--Hb_000946_120 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_001541_260 Hb_001541_260 Hb_000032_490--Hb_001541_260 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140 Hb_003018_060--Hb_006960_050 Hb_003018_060--Hb_006623_020 Hb_106552_050 Hb_106552_050 Hb_003018_060--Hb_106552_050 Hb_000640_220 Hb_000640_220 Hb_003018_060--Hb_000640_220 Hb_006620_020 Hb_006620_020 Hb_003018_060--Hb_006620_020 Hb_003020_010 Hb_003020_010 Hb_001357_090--Hb_003020_010 Hb_000926_310 Hb_000926_310 Hb_001357_090--Hb_000926_310 Hb_000046_300 Hb_000046_300 Hb_001357_090--Hb_000046_300 Hb_002024_040 Hb_002024_040 Hb_001357_090--Hb_002024_040 Hb_001329_130 Hb_001329_130 Hb_001357_090--Hb_001329_130 Hb_000794_050 Hb_000794_050 Hb_000368_020--Hb_000794_050 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_000368_020--Hb_006960_050 Hb_000368_020--Hb_106552_050 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.7591 18.8265 25.761 11.1362 33.9112 30.1641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5328 19.8417 18.4309 7.96846 16.7589

CAGE analysis