Hb_001357_090

Information

Type -
Description -
Location Contig1357: 58238-59852
Sequence    

Annotation

kegg
ID pmum:103326537
description small ubiquitin-related modifier 1
nr
ID XP_012070895.1
description PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
swissprot
ID P55852
description Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2
trembl
ID A0A067KW36
description Small ubiquitin-related modifier OS=Jatropha curcas GN=JCGZ_00940 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09911: 58111-59868 , PASA_asmbl_09914: 58280-59644 , PASA_asmbl_09915: 58218-77552
cDNA
(Sanger)
(ID:Location)		 001_D23.ab1: 58168-59811 , 012_L07.ab1: 58178-59794 , 022_I23.ab1: 58174-59734 , 027_L22.ab1: 58178-59868 , 035_B03.ab1: 58111-59788 , 047_I19.ab1: 58171-59790

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_090 0.0 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
2 Hb_003994_200 0.0823078149 - - PREDICTED: uncharacterized protein LOC105646142 [Jatropha curcas]
3 Hb_003020_010 0.0874025059 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
4 Hb_000926_310 0.0880493955 - - uncharacterized protein LOC100500241 [Glycine max]
5 Hb_000046_300 0.088639603 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
6 Hb_002024_040 0.0913259634 - - PREDICTED: adenosine kinase [Jatropha curcas]
7 Hb_001329_130 0.0914532524 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005288_150 0.0923741573 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
9 Hb_000923_040 0.0933118713 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
10 Hb_002639_150 0.094275725 - - -
11 Hb_009646_030 0.0944479525 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000368_020 0.0951089409 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
13 Hb_031527_100 0.0966522415 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000390_130 0.0966871522 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
15 Hb_000260_100 0.0980216431 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003018_060 0.0984593988 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
17 Hb_006064_010 0.0993740465 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
18 Hb_020367_050 0.0998362829 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
19 Hb_012627_050 0.100361981 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
20 Hb_106552_050 0.1020825999 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_090 Hb_001357_090 Hb_003994_200 Hb_003994_200 Hb_001357_090--Hb_003994_200 Hb_003020_010 Hb_003020_010 Hb_001357_090--Hb_003020_010 Hb_000926_310 Hb_000926_310 Hb_001357_090--Hb_000926_310 Hb_000046_300 Hb_000046_300 Hb_001357_090--Hb_000046_300 Hb_002024_040 Hb_002024_040 Hb_001357_090--Hb_002024_040 Hb_001329_130 Hb_001329_130 Hb_001357_090--Hb_001329_130 Hb_007007_060 Hb_007007_060 Hb_003994_200--Hb_007007_060 Hb_021422_010 Hb_021422_010 Hb_003994_200--Hb_021422_010 Hb_000032_490 Hb_000032_490 Hb_003994_200--Hb_000032_490 Hb_003018_060 Hb_003018_060 Hb_003994_200--Hb_003018_060 Hb_000368_020 Hb_000368_020 Hb_003994_200--Hb_000368_020 Hb_016461_010 Hb_016461_010 Hb_003020_010--Hb_016461_010 Hb_000390_170 Hb_000390_170 Hb_003020_010--Hb_000390_170 Hb_020367_050 Hb_020367_050 Hb_003020_010--Hb_020367_050 Hb_005288_150 Hb_005288_150 Hb_003020_010--Hb_005288_150 Hb_000390_180 Hb_000390_180 Hb_003020_010--Hb_000390_180 Hb_003020_010--Hb_001329_130 Hb_002639_150 Hb_002639_150 Hb_000926_310--Hb_002639_150 Hb_000661_140 Hb_000661_140 Hb_000926_310--Hb_000661_140 Hb_000926_310--Hb_020367_050 Hb_003687_230 Hb_003687_230 Hb_000926_310--Hb_003687_230 Hb_000926_310--Hb_005288_150 Hb_000926_310--Hb_000368_020 Hb_001439_150 Hb_001439_150 Hb_000046_300--Hb_001439_150 Hb_000666_110 Hb_000666_110 Hb_000046_300--Hb_000666_110 Hb_000046_300--Hb_002024_040 Hb_001511_020 Hb_001511_020 Hb_000046_300--Hb_001511_020 Hb_006065_020 Hb_006065_020 Hb_000046_300--Hb_006065_020 Hb_008253_010 Hb_008253_010 Hb_002024_040--Hb_008253_010 Hb_007026_030 Hb_007026_030 Hb_002024_040--Hb_007026_030 Hb_002024_040--Hb_000368_020 Hb_007904_120 Hb_007904_120 Hb_002024_040--Hb_007904_120 Hb_000260_100 Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_001329_130--Hb_005288_150 Hb_006960_050 Hb_006960_050 Hb_001329_130--Hb_006960_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
300.537 110.974 240.877 72.6279 311.467 248.266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.571 166.337 187.87 63.1418 114.761

CAGE analysis