Hb_000390_180

Information

Type -
Description -
Location Contig390: 205233-208348
Sequence    

Annotation

kegg
ID fve:101291673
description uncharacterized protein LOC101291673
nr
ID XP_004307847.2
description PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID A0A061EZU2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_025521 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box only 46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39104: 205357-207688 , PASA_asmbl_39105: 205409-207681
cDNA
(Sanger)
(ID:Location)		 036_O21.ab1: 205409-207681

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_180 0.0 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
2 Hb_000498_010 0.0551125777 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000853_230 0.0567817094 - - syntaxin, putative [Ricinus communis]
4 Hb_001390_110 0.059493866 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
5 Hb_016461_010 0.0624208184 - - PREDICTED: proline synthase co-transcribed bacterial homolog protein [Jatropha curcas]
6 Hb_006620_020 0.0670747731 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
7 Hb_001936_060 0.0678241409 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
8 Hb_000879_200 0.0688660976 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
9 Hb_009545_080 0.073459693 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
10 Hb_008406_110 0.0759145452 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
11 Hb_000617_240 0.076157363 - - PREDICTED: uncharacterized protein LOC105647502 [Jatropha curcas]
12 Hb_011609_080 0.0767231227 - - uv excision repair protein rad23, putative [Ricinus communis]
13 Hb_000794_050 0.0771088569 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
14 Hb_030736_100 0.0787744922 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000365_120 0.0794532332 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
16 Hb_003025_110 0.0808036726 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
17 Hb_001926_030 0.0809603243 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
18 Hb_002686_250 0.081598444 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
19 Hb_004055_150 0.082029615 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002684_040 0.0829208259 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000390_180 Hb_000390_180 Hb_000498_010 Hb_000498_010 Hb_000390_180--Hb_000498_010 Hb_000853_230 Hb_000853_230 Hb_000390_180--Hb_000853_230 Hb_001390_110 Hb_001390_110 Hb_000390_180--Hb_001390_110 Hb_016461_010 Hb_016461_010 Hb_000390_180--Hb_016461_010 Hb_006620_020 Hb_006620_020 Hb_000390_180--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_000390_180--Hb_001936_060 Hb_000879_200 Hb_000879_200 Hb_000498_010--Hb_000879_200 Hb_000618_030 Hb_000618_030 Hb_000498_010--Hb_000618_030 Hb_000498_010--Hb_000853_230 Hb_001926_030 Hb_001926_030 Hb_000498_010--Hb_001926_030 Hb_000794_050 Hb_000794_050 Hb_000498_010--Hb_000794_050 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000853_230--Hb_000879_200 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_000853_230--Hb_001926_030 Hb_001390_110--Hb_001936_060 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_001390_110--Hb_000853_230 Hb_000926_190 Hb_000926_190 Hb_001390_110--Hb_000926_190 Hb_001390_110--Hb_000794_050 Hb_003020_010 Hb_003020_010 Hb_016461_010--Hb_003020_010 Hb_000617_240 Hb_000617_240 Hb_016461_010--Hb_000617_240 Hb_016461_010--Hb_000498_010 Hb_011609_080 Hb_011609_080 Hb_016461_010--Hb_011609_080 Hb_001621_170 Hb_001621_170 Hb_016461_010--Hb_001621_170 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_001289_080 Hb_001289_080 Hb_001936_060--Hb_001289_080 Hb_156973_010 Hb_156973_010 Hb_001936_060--Hb_156973_010 Hb_001936_060--Hb_000853_230 Hb_002890_020 Hb_002890_020 Hb_001936_060--Hb_002890_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4789 12.9491 16.7389 8.78887 24.6995 20.6129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7789 13.6728 15.1507 15.5195 12.3323

CAGE analysis