Hb_002890_020

Information

Type transcription factor
Description TF Family: C3H
Location Contig2890: 6036-17043
Sequence    

Annotation

kegg
ID rcu:RCOM_0496850
description U2 snrnp auxiliary factor, small subunit, putative
nr
ID XP_012066743.1
description PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
swissprot
ID Q6YVX9
description Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica GN=Os02g0557500 PE=2 SV=2
trembl
ID A0A067L1Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00298 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger ccch domain-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30172: 9790-10103 , PASA_asmbl_30173: 10706-10903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_020 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
2 Hb_000207_310 0.061115684 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
3 Hb_000345_170 0.0638371942 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
4 Hb_002205_040 0.0720376739 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000029_130 0.07261892 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
6 Hb_016898_010 0.0740247008 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_003952_150 0.074400192 - - PREDICTED: cactin [Jatropha curcas]
8 Hb_023386_040 0.0775838843 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
9 Hb_001936_060 0.0777121701 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
10 Hb_002271_030 0.0783714521 - - Vacuolar protein sorting protein, putative [Ricinus communis]
11 Hb_000320_200 0.0788052549 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
12 Hb_001289_080 0.0803158654 - - PREDICTED: protein YLS9-like [Jatropha curcas]
13 Hb_001390_110 0.0809578492 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
14 Hb_106371_010 0.0820880844 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_000373_280 0.0822050894 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
16 Hb_000926_190 0.0822642362 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
17 Hb_003158_010 0.0828310056 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
18 Hb_003025_110 0.0833454131 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_006915_070 0.0834738681 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
20 Hb_156973_010 0.0836874964 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002890_020 Hb_002890_020 Hb_000207_310 Hb_000207_310 Hb_002890_020--Hb_000207_310 Hb_000345_170 Hb_000345_170 Hb_002890_020--Hb_000345_170 Hb_002205_040 Hb_002205_040 Hb_002890_020--Hb_002205_040 Hb_000029_130 Hb_000029_130 Hb_002890_020--Hb_000029_130 Hb_016898_010 Hb_016898_010 Hb_002890_020--Hb_016898_010 Hb_003952_150 Hb_003952_150 Hb_002890_020--Hb_003952_150 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_000116_180 Hb_000116_180 Hb_000207_310--Hb_000116_180 Hb_000913_050 Hb_000913_050 Hb_000207_310--Hb_000913_050 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_010381_060 Hb_010381_060 Hb_000029_130--Hb_010381_060 Hb_000029_130--Hb_000913_050 Hb_003464_020 Hb_003464_020 Hb_000029_130--Hb_003464_020 Hb_009627_010 Hb_009627_010 Hb_000029_130--Hb_009627_010 Hb_003362_070 Hb_003362_070 Hb_016898_010--Hb_003362_070 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_048476_180 Hb_048476_180 Hb_016898_010--Hb_048476_180 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_016898_010--Hb_003952_150 Hb_003952_150--Hb_000084_120 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003952_150--Hb_003362_070 Hb_003952_150--Hb_010381_060 Hb_000320_200 Hb_000320_200 Hb_003952_150--Hb_000320_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1798 4.92102 3.29305 3.64271 9.77898 9.38929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.79553 6.5441 5.38261 7.43463 6.11747

CAGE analysis