Hb_048476_180

Information

Type -
Description -
Location Contig48476: 153359-164413
Sequence    

Annotation

kegg
ID rcu:RCOM_0598070
description protein with unknown function
nr
ID XP_012072304.1
description PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
swissprot
ID F4HXV6
description Nuclear pore complex protein NUP155 OS=Arabidopsis thaliana GN=NUP155 PE=1 SV=1
trembl
ID A0A067L0V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04758 PE=4 SV=1
Gene Ontology
ID GO:0005643
description nuclear pore complex protein nup155

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44962: 153780-157711 , PASA_asmbl_44963: 156623-157711 , PASA_asmbl_44965: 158059-160691 , PASA_asmbl_44966: 161346-164469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048476_180 0.0 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
2 Hb_003362_070 0.0441509944 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
3 Hb_007307_020 0.0503401227 - - DNA binding protein, putative [Ricinus communis]
4 Hb_016898_010 0.0565156212 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
5 Hb_009411_010 0.0625629355 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
6 Hb_000101_240 0.0643507392 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
7 Hb_004935_030 0.0649220861 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
8 Hb_000035_290 0.0653644475 - - RNA recognition motif-containing family protein [Populus trichocarpa]
9 Hb_000183_020 0.0656089493 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
10 Hb_000820_170 0.0670494891 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
11 Hb_003952_150 0.0679051227 - - PREDICTED: cactin [Jatropha curcas]
12 Hb_003966_030 0.0713257684 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
13 Hb_003680_150 0.0722100183 - - srpk, putative [Ricinus communis]
14 Hb_027380_140 0.07288661 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
15 Hb_001599_030 0.0729977209 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
16 Hb_000457_260 0.0733800966 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
17 Hb_000084_120 0.073657532 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
18 Hb_002823_030 0.0740714267 - - -
19 Hb_003371_110 0.0741018355 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
20 Hb_000190_120 0.0747501803 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]

Gene co-expression network

sample Hb_048476_180 Hb_048476_180 Hb_003362_070 Hb_003362_070 Hb_048476_180--Hb_003362_070 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_016898_010 Hb_016898_010 Hb_048476_180--Hb_016898_010 Hb_009411_010 Hb_009411_010 Hb_048476_180--Hb_009411_010 Hb_000101_240 Hb_000101_240 Hb_048476_180--Hb_000101_240 Hb_004935_030 Hb_004935_030 Hb_048476_180--Hb_004935_030 Hb_003362_070--Hb_016898_010 Hb_003362_070--Hb_004935_030 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_001143_250 Hb_001143_250 Hb_007307_020--Hb_001143_250 Hb_001599_030 Hb_001599_030 Hb_007307_020--Hb_001599_030 Hb_000300_440 Hb_000300_440 Hb_007307_020--Hb_000300_440 Hb_027380_140 Hb_027380_140 Hb_007307_020--Hb_027380_140 Hb_002235_160 Hb_002235_160 Hb_007307_020--Hb_002235_160 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_016898_010--Hb_000101_240 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_000101_240--Hb_003428_070 Hb_000101_240--Hb_000084_120 Hb_000101_240--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.91789 8.12796 5.01134 4.49214 9.52411 13.4167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29195 5.37095 6.8117 7.95421 7.94019

CAGE analysis