Hb_006915_070

Information

Type -
Description -
Location Contig6915: 47106-48242
Sequence    

Annotation

kegg
ID dpo:Dpse_GA22973
description GA22973 gene product from transcript GA22973-RA
nr
ID ELT87078.1
description hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
swissprot
ID -
description -
trembl
ID R7T387
description Uncharacterized protein (Fragment) OS=Capitella teleta GN=CAPTEDRAFT_111329 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54395: 46533-49388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006915_070 0.0 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
2 Hb_000034_040 0.0616130346 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
3 Hb_002681_070 0.0703841737 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
4 Hb_000345_170 0.0716437673 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
5 Hb_000116_180 0.07177522 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
6 Hb_008785_040 0.0771239116 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
7 Hb_000856_110 0.0790138715 - - PREDICTED: uncharacterized protein LOC105640477 isoform X2 [Jatropha curcas]
8 Hb_004100_080 0.0807920563 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004412_010 0.0822293953 - - -
10 Hb_000025_110 0.0824412402 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
11 Hb_002890_020 0.0834738681 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
12 Hb_002909_050 0.0838422592 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009411_010 0.0851332326 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
14 Hb_000926_190 0.0870879798 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_023386_020 0.0880131764 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
16 Hb_002527_030 0.0881143967 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
17 Hb_048476_180 0.0889821606 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
18 Hb_023278_010 0.0892174997 - - Chaperone protein DnaJ [Glycine soja]
19 Hb_016898_010 0.0893742288 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
20 Hb_000714_050 0.0898425011 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]

Gene co-expression network

sample Hb_006915_070 Hb_006915_070 Hb_000034_040 Hb_000034_040 Hb_006915_070--Hb_000034_040 Hb_002681_070 Hb_002681_070 Hb_006915_070--Hb_002681_070 Hb_000345_170 Hb_000345_170 Hb_006915_070--Hb_000345_170 Hb_000116_180 Hb_000116_180 Hb_006915_070--Hb_000116_180 Hb_008785_040 Hb_008785_040 Hb_006915_070--Hb_008785_040 Hb_000856_110 Hb_000856_110 Hb_006915_070--Hb_000856_110 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_000034_040--Hb_002681_070 Hb_002681_070--Hb_008785_040 Hb_001019_190 Hb_001019_190 Hb_002681_070--Hb_001019_190 Hb_000819_080 Hb_000819_080 Hb_002681_070--Hb_000819_080 Hb_005496_130 Hb_005496_130 Hb_002681_070--Hb_005496_130 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_008785_040--Hb_005496_130 Hb_002154_100 Hb_002154_100 Hb_008785_040--Hb_002154_100 Hb_004100_080 Hb_004100_080 Hb_008785_040--Hb_004100_080 Hb_008785_040--Hb_000856_110 Hb_000856_110--Hb_004100_080 Hb_023386_020 Hb_023386_020 Hb_000856_110--Hb_023386_020 Hb_004841_010 Hb_004841_010 Hb_000856_110--Hb_004841_010 Hb_004412_010 Hb_004412_010 Hb_000856_110--Hb_004412_010 Hb_000165_250 Hb_000165_250 Hb_000856_110--Hb_000165_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.99602 1.19726 0.904703 0.790463 2.63394 2.74803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43203 1.50152 1.28346 1.21185 2.09044

CAGE analysis