Hb_015884_030

Information

Type -
Description -
Location Contig15884: 59202-66331
Sequence    

Annotation

kegg
ID rcu:RCOM_0611010
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089392.1
description PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23587 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14096: 59252-61816 , PASA_asmbl_14097: 61834-63027 , PASA_asmbl_14098: 65819-66244
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015884_030 0.0 - - PREDICTED: uncharacterized protein LOC105647778 isoform X1 [Jatropha curcas]
2 Hb_000034_040 0.0648895668 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
3 Hb_003938_080 0.0729015802 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
4 Hb_003544_100 0.0753970151 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
5 Hb_009411_010 0.078079989 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
6 Hb_000010_180 0.0782110718 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
7 Hb_006915_060 0.0850415701 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
8 Hb_000574_440 0.0903494903 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
9 Hb_000514_060 0.0938053982 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
10 Hb_001599_030 0.0962275453 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
11 Hb_006915_070 0.0967337181 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
12 Hb_002909_050 0.0973507266 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002232_030 0.0992677317 - - Pinin, putative [Ricinus communis]
14 Hb_000502_050 0.0996777301 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
15 Hb_012799_030 0.1013518558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
16 Hb_000463_140 0.1027093826 - - Poly(rC)-binding protein, putative [Ricinus communis]
17 Hb_000041_090 0.1038497172 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
18 Hb_011139_030 0.1040723438 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
19 Hb_000768_190 0.1047061943 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
20 Hb_004155_010 0.1058356792 - - PREDICTED: la protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_015884_030 Hb_015884_030 Hb_000034_040 Hb_000034_040 Hb_015884_030--Hb_000034_040 Hb_003938_080 Hb_003938_080 Hb_015884_030--Hb_003938_080 Hb_003544_100 Hb_003544_100 Hb_015884_030--Hb_003544_100 Hb_009411_010 Hb_009411_010 Hb_015884_030--Hb_009411_010 Hb_000010_180 Hb_000010_180 Hb_015884_030--Hb_000010_180 Hb_006915_060 Hb_006915_060 Hb_015884_030--Hb_006915_060 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_012799_030 Hb_012799_030 Hb_000034_040--Hb_012799_030 Hb_000034_040--Hb_003938_080 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070 Hb_003938_080--Hb_009411_010 Hb_003216_080 Hb_003216_080 Hb_003938_080--Hb_003216_080 Hb_003938_080--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_003938_080--Hb_000101_240 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_003544_100--Hb_009411_010 Hb_001599_030 Hb_001599_030 Hb_003544_100--Hb_001599_030 Hb_003544_100--Hb_006915_060 Hb_000320_200 Hb_000320_200 Hb_003544_100--Hb_000320_200 Hb_003544_100--Hb_003216_080 Hb_009411_010--Hb_000101_240 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_009411_010--Hb_000502_050 Hb_000010_180--Hb_003544_100 Hb_000010_180--Hb_006915_060 Hb_006449_050 Hb_006449_050 Hb_000010_180--Hb_006449_050 Hb_000768_190 Hb_000768_190 Hb_000010_180--Hb_000768_190 Hb_002909_050 Hb_002909_050 Hb_000010_180--Hb_002909_050 Hb_006915_060--Hb_009411_010 Hb_004218_240 Hb_004218_240 Hb_006915_060--Hb_004218_240 Hb_003847_120 Hb_003847_120 Hb_006915_060--Hb_003847_120 Hb_006915_060--Hb_001599_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7584 10.6193 8.15221 4.08146 19.4304 20.0201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.51331 6.88678 14.0913 6.55974 14.8431

CAGE analysis